Xun Xu

Research interests

Publications

• Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays

  Cell · 2022 · https://doi.org/10.1016/j.cell.2022.04.003

• Outlook on human-centric manufacturing towards Industry 5.0

  Journal of Manufacturing Systems · 2022 · https://doi.org/10.1016/j.jmsy.2022.02.001

• Industry 4.0 and Industry 5.0—Inception, conception and perception

  Journal of Manufacturing Systems · 2021 · https://doi.org/10.1016/j.jmsy.2021.10.006

• An atlas of the protein-coding genes in the human, pig, and mouse brain

  Science · 2020 · https://doi.org/10.1126/science.aay5947

• Smart manufacturing process and system automation – A critical review of the standards and envisioned scenarios

  Journal of Manufacturing Systems · 2020 · https://doi.org/10.1016/j.jmsy.2020.06.010

• Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma

  Cell · 2020 · https://doi.org/10.1016/j.cell.2020.11.041

• 1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

  Nature Biotechnology · 2019 · 10.1038/s41587-018-0008-8

• Digital Twin-driven smart manufacturing: Connotation, reference model, applications and research issues

  Robotics and Computer-Integrated Manufacturing · 2019 · https://doi.org/10.1016/j.rcim.2019.101837

• Earth BioGenome Project: Sequencing life for the future of life

  Proceedings of the National Academy of Sciences · 2018 · https://doi.org/10.1073/pnas.1720115115

• Smart manufacturing systems for Industry 4.0: Conceptual framework, scenarios, and future perspectives

  Frontiers of Mechanical Engineering · 2018 · https://doi.org/10.1007/s11465-018-0499-5

• Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention

  Nature Medicine · 2017 · 10.1038/nm.4358

• Correction of a pathogenic gene mutation in human embryos

  Nature · 2017 · https://doi.org/10.1038/nature23305

• Intelligent Manufacturing in the Context of Industry 4.0: A Review

  Engineering · 2017 · https://doi.org/10.1016/j.eng.2017.05.015

• The microbiota continuum along the female reproductive tract and its relation to uterine-related diseases

  Nature Communications · 2017 · 10.1038/s41467-017-00901-0

• Time spent in outdoor activities in relation to myopia prevention and control: a meta‐analysis and systematic review

  Acta Ophthalmologica · 2017 · https://doi.org/10.1111/aos.13403

• The gut microbiome in atherosclerotic cardiovascular disease

  Nature Communications · 2017 · 10.1038/s41467-017-00900-1

• A reference gene catalogue of the pig gut microbiome

  Nature Microbiology · 2016 · 10.1038/nmicrobiol.2016.161

• The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

  Nature Genetics · 2016 · 10.1038/ng.3517

• Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer

  Gut · 2015 · 10.1136/gutjnl-2015-309800

• Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

  Cell Host & Microbe · 2015 · https://doi.org/10.1016/j.chom.2015.04.004

• A global reference for human genetic variation

  Nature · 2015 · https://doi.org/10.1038/nature15393

• Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

  Nature Biotechnology · 2015 · 10.1038/nbt.3208

• COLD1 Confers Chilling Tolerance in Rice

  Cell · 2015 · 10.1016/j.cell.2015.01.046

• Gut microbiome development along the colorectal adenoma–carcinoma sequence

  Nature Communications · 2015 · 10.1038/ncomms7528

• An integrated catalog of reference genes in the human gut microbiome

  Nature Biotechnology · 2014 · https://doi.org/10.1038/nbt.2942

• Phylogenomics resolves the timing and pattern of insect evolution

  Science · 2014 · https://doi.org/10.1126/science.1257570

• Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

  Nature · 2014 · 10.1038/nature13408

• The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

  Nature Communications · 2014 · 10.1038/ncomms4930

• SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads

  Bioinformatics · 2014 · 10.1093/bioinformatics/btu077

• Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

  Nature Biotechnology · 2013 · 10.1038/nbt.2491

• Single-Cell Exome Sequencing and Monoclonal Evolution of a JAK2-Negative Myeloproliferative Neoplasm

  Cell · 2012 · 10.1016/j.cell.2012.02.028

• Comparative population genomics of maize domestication and improvement

  Nature Genetics · 2012 · 10.1038/ng.2309

• The genome of the pear ( Pyrus bretschneideri Rehd.)

  Genome Research · 2012 · 10.1101/gr.144311.112

• Single-Cell Exome Sequencing Reveals Single-Nucleotide Mutation Characteristics of a Kidney Tumor

  Cell · 2012 · 10.1016/j.cell.2012.02.025

• The tomato genome sequence provides insights into fleshy fruit evolution

  Nature · 2012 · https://doi.org/10.1038/nature11119

• From cloud computing to cloud manufacturing

  Robotics and Computer-Integrated Manufacturing · 2011 · https://doi.org/10.1016/j.rcim.2011.07.002

• Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

  Nature Biotechnology · 2011 · 10.1038/nbt.2050

• The genome of the mesopolyploid crop species Brassica rapa

  Nature Genetics · 2011 · 10.1038/ng.919

• Sirtuin 1–Mediated Cellular Metabolic Memory of High Glucose Via the LKB1/AMPK/ROS Pathway and Therapeutic Effects of Metformin

  Diabetes · 2011 · https://doi.org/10.2337/db11-0416

• Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

  Science · 2010 · 10.1126/science.1190371

• Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

  Nature Genetics · 2010 · 10.1038/ng.715

Current projects

No projects listed.