Keith A. Crandall

Research interests

Publications

• Genome-wide analysis of SARS-CoV-2 virus strains circulating worldwide implicates heterogeneity

  Scientific Reports · 2020 · https://doi.org/10.1038/s41598-020-70812-6

• Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression

  PLoS Computational Biology · 2019 · https://doi.org/10.1371/journal.pcbi.1006453

• Metagenomic deep sequencing reveals association of microbiome signature with functional biases in bovine mastitis

  Scientific Reports · 2019 · https://doi.org/10.1038/s41598-019-49468-4

• Earth BioGenome Project: Sequencing life for the future of life

  Proceedings of the National Academy of Sciences · 2018 · https://doi.org/10.1073/pnas.1720115115

• Synthesis of phylogeny and taxonomy into a comprehensive tree of life

  Proceedings of the National Academy of Sciences · 2015 · https://doi.org/10.1073/pnas.1423041112

• Multiple drivers of decline in the global status of freshwater crayfish (Decapoda: Astacidea)

  Philosophical Transactions of the Royal Society B Biological Sciences · 2015 · https://doi.org/10.1098/rstb.2014.0060

• A Classification of Living and Fossil Genera of Decapod Crustaceans

  DSpace Repository (Smithsonian) · 2009

• Phylogeography’s past, present, and future: 10 years after Avise, 2000

  Molecular Phylogenetics and Evolution · 2009 · https://doi.org/10.1016/j.ympev.2009.09.016

• Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

  Proceedings of the National Academy of Sciences · 2008 · https://doi.org/10.1073/pnas.0803076105

• A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints

  AIDS Research and Human Retroviruses · 2005 · https://doi.org/10.1089/aid.2005.21.98

• The Impact of Species Concept on Biodiversity Studies

  The Quarterly Review of Biology · 2004 · https://doi.org/10.1086/383542

• TCS: estimating gene genealogies

  Journal · 2002 · https://doi.org/10.1109/ipdps.2002.1016585

• Selecting the Best-Fit Model of Nucleotide Substitution

  Systematic Biology · 2001 · https://doi.org/10.1080/106351501750435121

• Evaluation of methods for detecting recombination from DNA sequences: Computer simulations

  Proceedings of the National Academy of Sciences · 2001 · https://doi.org/10.1073/pnas.241370698

• Intraspecific gene genealogies: trees grafting into networks

  Trends in Ecology & Evolution · 2001 · https://doi.org/10.1016/s0169-5347(00)02026-7

• Selecting the Best-Fit Model of Nucleotide Substitution

  Systematic Biology · 2001 · https://doi.org/10.1080/10635150118469

• Intragenomic Variation Within ITS1 and ITS2 of Freshwater Crayfishes (Decapoda: Cambaridae): Implications for Phylogenetic and Microsatellite Studies

  Molecular Biology and Evolution · 2000 · https://doi.org/10.1093/oxfordjournals.molbev.a026308

• GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes

  Molecular Ecology · 2000 · https://doi.org/10.1046/j.1365-294x.2000.00887.x

• TCS: a computer program to estimate gene genealogies

  Molecular Ecology · 2000 · https://doi.org/10.1046/j.1365-294x.2000.01020.x

• Considering evolutionary processes in conservation biology

  Trends in Ecology & Evolution · 2000 · https://doi.org/10.1016/s0169-5347(00)01876-0

• MODELTEST: testing the model of DNA substitution.

  Bioinformatics · 1998 · https://doi.org/10.1093/bioinformatics/14.9.817

• Phylogeny Estimation and Hypothesis Testing Using Maximum Likelihood

  Annual Review of Ecology and Systematics · 1997 · https://doi.org/10.1146/annurev.ecolsys.28.1.437

• Multiple and Ancient Origins of the Domestic Dog

  Science · 1997 · https://doi.org/10.1126/science.276.5319.1687

• Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction.

  Genetics · 1993 · https://doi.org/10.1093/genetics/134.3.959

• A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation.

  Genetics · 1992 · https://doi.org/10.1093/genetics/132.2.619

Current projects

No projects listed.