Daniel Petras

Research interests

Publications

• Reproducible mass spectrometry data processing and compound annotation in MZmine 3

  Nature Protocols · 2024 · 10.1038/s41596-024-00996-y

• Integrative analysis of multimodal mass spectrometry data in MZmine 3

  Nature Biotechnology · 2023 · https://doi.org/10.1038/s41587-023-01690-2

• Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

  Nature Microbiology · 2022 · 10.1038/s41564-022-01266-x

• Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

  Nature Communications · 2021 · 10.1038/s41467-021-23953-9

• A community resource for paired genomic and metabolomic data mining

  Nature Chemical Biology · 2021 · 10.1038/s41589-020-00724-z

• Convergent evolution of pain-inducing defensive venom components in spitting cobras

  Science · 2021 · 10.1126/science.abb9303

• Feature-based molecular networking in the GNPS analysis environment

  Nature Methods · 2020 · https://doi.org/10.1038/s41592-020-0933-6

• Reproducible molecular networking of untargeted mass spectrometry data using GNPS

  Nature Protocols · 2020 · https://doi.org/10.1038/s41596-020-0317-5

• Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra

  Nature Biotechnology · 2020 · 10.1038/s41587-020-0740-8

• Mass spectrometry searches using MASST

  Nature Biotechnology · 2020 · 10.1038/s41587-019-0375-9

• Database-independent molecular formula annotation using Gibbs sampling through ZODIAC

  Nature Machine Intelligence · 2020 · 10.1038/s42256-020-00234-6

• Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

  Nature Biotechnology · 2020 · 10.1038/s41587-020-0700-3

• ReDU: a framework to find and reanalyze public mass spectrometry data

  Nature Methods · 2020 · 10.1038/s41592-020-0916-7

• Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

  Nature Biotechnology · 2019 · https://doi.org/10.1038/s41587-019-0252-6

• Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

  Nature Biotechnology · 2019 · https://doi.org/10.1038/s41587-019-0209-9

• Feature-based Molecular Networking in the GNPS Analysis Environment

  bioRxiv (Cold Spring Harbor Laboratory) · 2019 · 10.1101/812404

• The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization

  Nature Communications · 2019 · 10.1038/s41467-019-09944-x

• QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

  · 2018 · 10.7287/peerj.preprints.27295v1

• QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

  · 2018 · 10.7287/peerj.preprints.27295

• QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

  · 2018 · 10.7287/peerj.preprints.27295v2

• High-Resolution Liquid Chromatography Tandem Mass Spectrometry Enables Large Scale Molecular Characterization of Dissolved Organic Matter

  Frontiers in Marine Science · 2017 · 10.3389/fmars.2017.00405

• Significance estimation for large scale metabolomics annotations by spectral matching

  Nature Communications · 2017 · 10.1038/s41467-017-01318-5

• The gyrase inhibitor albicidin consists of p-aminobenzoic acids and cyanoalanine

  Nature Chemical Biology · 2015 · 10.1038/nchembio.1734

• Minimum Information about a Biosynthetic Gene cluster

  Nature Chemical Biology · 2015 · 10.1038/nchembio.1890

• Snake Venomics of African Spitting Cobras: Toxin Composition and Assessment of Congeneric Cross-Reactivity of the Pan-African EchiTAb-Plus-ICP Antivenom by Antivenomics and Neutralization Approaches

  Journal of Proteome Research · 2010 · 10.1021/pr101040f

Current projects

No projects listed.