Mark Chaisson
Researcher Next ID · RN-019461
Researcher · Biochemistry, Genetics and Molecular Biology
San Francisco, France
- Works count
- 122
- Citation count
- 98,003
- H-index
- 45
- i10-index
- 64
Research interests
Publications
Pangenome graph construction from genome alignments with Minigraph-Cactus
Nature Biotechnology · 2023 · 10.1038/s41587-023-01793-w
The Human Pangenome Project: a global resource to map genomic diversity
Nature · 2022 · 10.1038/s41586-022-04601-8
Semi-automated assembly of high-quality diploid human reference genomes
Nature · 2022 · 10.1038/s41586-022-05325-5
Towards complete and error-free genome assemblies of all vertebrate species
Nature · 2021 · https://doi.org/10.1038/s41586-021-03451-0
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
Science · 2021 · https://doi.org/10.1126/science.abf7117
Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads
Nature Biotechnology · 2020 · 10.1038/s41587-020-0719-5
A robust benchmark for detection of germline large deletions and insertions
Nature Biotechnology · 2020 · 10.1038/s41587-020-0538-8
Human-specific tandem repeat expansion and differential gene expression during primate evolution
Proceedings of the National Academy of Sciences · 2019 · 10.1073/pnas.1912175116
Multi-platform discovery of haplotype-resolved structural variation in human genomes
Nature Communications · 2019 · https://doi.org/10.1038/s41467-018-08148-z
Human-specific tandem repeat expansion and differential gene expression during primate evolution
Proceedings of the National Academy of Sciences · 2019 · 10.1073/pnas.1912175116
High-resolution comparative analysis of great ape genomes
Science · 2018 · 10.1126/science.aar6343
Long-read sequence and assembly of segmental duplications
Nature Methods · 2018 · 10.1038/s41592-018-0236-3
Long-read sequence assembly of the gorilla genome
Science · 2016 · 10.1126/science.aae0344
Discovery and genotyping of structural variation from long-read haploid genome sequence data
Genome Research · 2016 · 10.1101/gr.214007.116
Assembly of long error-prone reads using de Bruijn graphs
Proceedings of the National Academy of Sciences · 2016 · 10.1073/pnas.1604560113
An integrated map of structural variation in 2,504 human genomes
Nature · 2015 · https://doi.org/10.1038/nature15394
Genetic variation and the de novo assembly of human genomes
Nature Reviews Genetics · 2015 · 10.1038/nrg3933
Resolving the complexity of the human genome using single-molecule sequencing
Nature · 2014 · https://doi.org/10.1038/nature13907
Reconstructing complex regions of genomes using long-read sequencing technology
Genome Research · 2014 · 10.1101/gr.168450.113
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
BMC Bioinformatics · 2012 · 10.1186/1471-2105-13-238
STAR: ultrafast universal RNA-seq aligner
Bioinformatics · 2012 · 10.1093/bioinformatics/bts635
De novo fragment assembly with short mate-paired reads: Does the read length matter?
Genome Research · 2008 · 10.1101/gr.079053.108
Short read fragment assembly of bacterial genomes
Genome Research · 2007 · 10.1101/gr.7088808
Fragment assembly with short reads
Bioinformatics · 2004 · 10.1093/bioinformatics/bth205
Current projects
No projects listed.