Robin M. Warren

Research interests

Publications

• COVID-19 cough classification using machine learning and global smartphone recordings

  Computers in Biology and Medicine · 2021 · 10.1016/j.compbiomed.2021.104572

• Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

  Nature Reviews Microbiology · 2019 · 10.1038/s41579-019-0214-5

• Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis

  Nature Genetics · 2018 · 10.1038/s41588-017-0029-0

• The epidemiology, pathogenesis, transmission, diagnosis, and management of multidrug-resistant, extensively drug-resistant, and incurable tuberculosis

  The Lancet Respiratory Medicine · 2017 · https://doi.org/10.1016/s2213-2600(17)30079-6

• A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis

  European Respiratory Journal · 2017 · 10.1183/13993003.01354-2017

• Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage

  Nature Genetics · 2015 · 10.1038/ng.3195

• Global control of tuberculosis: from extensively drug-resistant to untreatable tuberculosis

  The Lancet Respiratory Medicine · 2014 · 10.1016/s2213-2600(14)70031-1

• Neo-antigens predicted by tumor genome meta-analysis correlate with increased patient survival

  Genome Research · 2014 · 10.1101/gr.165985.113

• Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis

  Archivio istituzionale della ricerca (Alma Mater Studiorum Università di Bologna) · 2013 · 10.1038/ng.2747

• Co-occurrence of anaerobic bacteria in colorectal carcinomas

  Microbiome · 2013 · 10.1186/2049-2618-1-16

• Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma

  Genome Research · 2011 · https://doi.org/10.1101/gr.126516.111

• Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes

  Genome Research · 2011 · 10.1101/gr.115428.110

• Evaluation of the Xpert MTB/RIF Assay for the Diagnosis of Pulmonary Tuberculosis in a High HIV Prevalence Setting

  American Journal of Respiratory and Critical Care Medicine · 2011 · 10.1164/rccm.201101-0056oc

• Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

  Nature · 2009 · https://doi.org/10.1038/nature08489

• Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing

  Genome Research · 2009 · 10.1101/gr.092924.109

• The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse

  Proceedings of the National Academy of Sciences · 2006 · 10.1073/pnas.0607048103

• Assembling millions of short DNA sequences using SSAKE

  Bioinformatics · 2006 · 10.1093/bioinformatics/btl629

• Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology

  BMC Microbiology · 2006 · https://doi.org/10.1186/1471-2180-6-23

• Evolution and expansion of the Mycobacterium tuberculosis PE and PPE multigene families and their association with the duplication of the ESAT-6 (esx) gene cluster regions.

  BMC Evolutionary Biology · 2006 · 10.1186/1471-2148-6-95

• Differentiation of Mycobacterium tuberculosis complex by PCR amplification of genomic regions of difference.

  PubMed · 2006

• Rate of Reinfection Tuberculosis after Successful Treatment Is Higher than Rate of New Tuberculosis

  American Journal of Respiratory and Critical Care Medicine · 2005 · 10.1164/rccm.200409-1200oc

• Proportion of tuberculosis transmission that takes place in households in a high-incidence area

  The Lancet · 2004 · 10.1016/s0140-6736(03)15332-9

• Patients with Active Tuberculosis often Have Different Strains in the Same Sputum Specimen

  American Journal of Respiratory and Critical Care Medicine · 2004 · 10.1164/rccm.200305-714oc

• Cryptococcosis in Human Immunodeficiency Virus–Negative Patients in the Era of Effective Azole Therapy

  Clinical Infectious Diseases · 2001 · https://doi.org/10.1086/322597

• Exogenous Reinfection as a Cause of Recurrent Tuberculosis after Curative Treatment

  New England Journal of Medicine · 1999 · 10.1056/nejm199910143411602

Current projects

No projects listed.