Ignacio Arganda‐Carreras

Research interests

Publications

• Avoiding a replication crisis in deep-learning-based bioimage analysis

  Nature Methods · 2021 · 10.1038/s41592-021-01284-3

• Deep Learning on Chest X-ray Images to Detect and Evaluate Pneumonia Cases at the Era of COVID-19

  Journal of Medical Systems · 2021 · 10.1007/s10916-021-01745-4

• Efficient and compact face descriptor for driver drowsiness detection

  Expert Systems with Applications · 2020 · 10.1016/j.eswa.2020.114334

• ANHIR: Automatic Non-Rigid Histological Image Registration Challenge

  IEEE Transactions on Medical Imaging · 2020 · 10.1109/tmi.2020.2986331

• MitoEM Dataset: Large-Scale 3D Mitochondria Instance Segmentation from EM Images

  Lecture notes in computer science · 2020 · 10.1007/978-3-030-59722-1_7

• Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy

  Nature Communications · 2019 · 10.1038/s41467-019-09552-9

• An Optimized Approach to Perform Bone Histomorphometry

  Frontiers in Endocrinology · 2018 · 10.3389/fendo.2018.00666

• Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification

  Bioinformatics · 2017 · https://doi.org/10.1093/bioinformatics/btx180

• Vision-Based Fall Detection with Convolutional Neural Networks

  Wireless Communications and Mobile Computing · 2017 · 10.1155/2017/9474806

• MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ

  Bioinformatics · 2016 · https://doi.org/10.1093/bioinformatics/btw413

• Crowdsourcing the creation of image segmentation algorithms for connectomics

  Frontiers in Neuroanatomy · 2015 · 10.3389/fnana.2015.00142

• Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling

  Nature Communications · 2014 · 10.1038/ncomms4639

• Mapping Social Behavior-Induced Brain Activation at Cellular Resolution in the Mouse

  Cell Reports · 2014 · 10.1016/j.celrep.2014.12.014

• Serial two-photon tomography for automated ex vivo mouse brain imaging

  Nature Methods · 2012 · 10.1038/nmeth.1854

• TrakEM2 Software for Neural Circuit Reconstruction

  PLoS ONE · 2012 · https://doi.org/10.1371/journal.pone.0038011

• Fiji: an open-source platform for biological-image analysis

  Nature Methods · 2012 · https://doi.org/10.1038/nmeth.2019

• BoneJ: Free and extensible bone image analysis in ImageJ

  Bone · 2010 · https://doi.org/10.1016/j.bone.2010.08.023

• 3D reconstruction of histological sections: Application to mammary gland tissue

  Microscopy Research and Technique · 2010 · 10.1002/jemt.20829

• Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization

  Lecture notes in computer science · 2006 · 10.1007/11889762_8

Current projects

No projects listed.