Romain Guyot

Research interests

Publications

• The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

  Nature Genetics · 2024 · 10.1038/s41588-024-01695-w

• How genomics can help biodiversity conservation

  Trends in Genetics · 2023 · 10.1016/j.tig.2023.01.005

• Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars

  Nature Genetics · 2022 · https://doi.org/10.1038/s41588-021-00971-3

• The era of reference genomes in conservation genomics

  Trends in Ecology & Evolution · 2022 · 10.1016/j.tree.2021.11.008

• High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

  Nature Communications · 2020 · 10.1038/s41467-019-14197-9

• Retrotransposons in Plant Genomes: Structure, Identification, and Classification through Bioinformatics and Machine Learning

  International Journal of Molecular Sciences · 2019 · 10.3390/ijms20153837

• CRISPR/Cas9-mediated efficient targeted mutagenesis has the potential to accelerate the domestication of Coffea canephora

  Plant Cell Tissue and Organ Culture (PCTOC) · 2018 · 10.1007/s11240-018-1429-2

• Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L

  Scientific Reports · 2018 · 10.1038/s41598-017-18800-1

• Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species

  Molecular Phylogenetics and Evolution · 2017 · 10.1016/j.ympev.2017.02.009

• The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

  The Plant Journal · 2017 · 10.1111/tpj.13625

• The pineapple genome and the evolution of CAM photosynthesis

  Nature Genetics · 2015 · https://doi.org/10.1038/ng.3435

• Assessment of genetic and epigenetic changes during cell culture ageing and relations with somaclonal variation in Coffea arabica

  Plant Cell Tissue and Organ Culture (PCTOC) · 2015 · 10.1007/s11240-015-0772-9

• Origin and domestication of papaya Y h chromosome

  Genome Research · 2015 · 10.1101/gr.183905.114

• The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

  Science · 2014 · https://doi.org/10.1126/science.1255274

• Characterization of the major fragance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice

  Theoretical and Applied Genetics · 2008 · 10.1007/s00122-008-0780-9

• Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis , a wild relative of rice

  Genome Research · 2006 · 10.1101/gr.5290206

• Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations

  Molecular Genetics and Genomics · 2005 · 10.1007/s00438-005-0012-9

• Ancestral genome duplication in rice

  Genome · 2004 · 10.1139/g04-016

• Rapid Genome Divergence at Orthologous Low Molecular Weight Glutenin Loci of the A and Am Genomes of Wheat[W]

  The Plant Cell · 2003 · https://doi.org/10.1105/tpc.011023

• Whole-Genome Comparison of Leucine-Rich Repeat Extensins in Arabidopsis and Rice. A Conserved Family of Cell Wall Proteins Form a Vegetative and a Reproductive Clade,

  PLANT PHYSIOLOGY · 2003 · 10.1104/pp.102.014928

• CACTA Transposons in Triticeae. A Diverse Family of High-Copy Repetitive Elements

  PLANT PHYSIOLOGY · 2003 · 10.1104/pp.102.015743

• The Organization of Cytoplasmic Ribosomal Protein Genes in the Arabidopsis Genome

  PLANT PHYSIOLOGY · 2001 · 10.1104/pp.010265

• Extensive Duplication and Reshuffling in the Arabidopsis Genome

  The Plant Cell · 2000 · 10.1105/tpc.12.7.1093

Current projects

No projects listed.