Mile Šikić
Researcher Next ID · RN-020575
Researcher · Biochemistry, Genetics and Molecular Biology
Agency for Science, Technology and Research
Singapore, Croatia
- Works count
- 145
- Citation count
- 9,164
- H-index
- 28
- i10-index
- 39
Research interests
Publications
A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell lines
Nature Methods · 2025 · 10.1038/s41592-025-02623-4
RiNALMo: general-purpose RNA language models can generalize well on structure prediction tasks
Nature Communications · 2025 · 10.1038/s41467-025-60872-5
RiNALMo: general-purpose RNA language models can generalize well on structure prediction tasks
Nature Communications · 2025 · 10.1038/s41467-025-60872-5
A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell lines
Nature Methods · 2025 · 10.1038/s41592-025-02623-4
Direct identification of A-to-I editing sites with nanopore native RNA sequencing
Nature Methods · 2022 · 10.1038/s41592-022-01513-3
Direct identification of A-to-I editing sites with nanopore native RNA sequencing
Nature Methods · 2022 · 10.1038/s41592-022-01513-3
A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines
bioRxiv (Cold Spring Harbor Laboratory) · 2021 · 10.1101/2021.04.21.440736
Time- and memory-efficient genome assembly with Raven
Nature Computational Science · 2021 · 10.1038/s43588-021-00073-4
A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines
bioRxiv (Cold Spring Harbor Laboratory) · 2021 · 10.1101/2021.04.21.440736
Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
Nature Biotechnology · 2019 · 10.1038/s41587-019-0191-2
Fast and accurate de novo genome assembly from long uncorrected reads
Genome Research · 2017 · https://doi.org/10.1101/gr.214270.116
Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance
Bioinformatics · 2016 · 10.1093/bioinformatics/btw753
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
Nature Communications · 2016 · 10.1038/ncomms11307
Identification of Patient Zero in Static and Temporal Networks: Robustness and Limitations
Physical Review Letters · 2015 · 10.1103/physrevlett.114.248701
SIFT missense predictions for genomes
Nature Protocols · 2015 · https://doi.org/10.1038/nprot.2015.123
Identification of Patient Zero in Static and Temporal Networks: Robustness and Limitations
Physical Review Letters · 2015 · 10.1103/physrevlett.114.248701
Large-Scale Functional Organization of Long-Range Chromatin Interaction Networks
Cell Reports · 2012 · 10.1016/j.celrep.2012.09.022
Large-Scale Functional Organization of Long-Range Chromatin Interaction Networks
Cell Reports · 2012 · 10.1016/j.celrep.2012.09.022
Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests
PLoS Computational Biology · 2009 · 10.1371/journal.pcbi.1000278
Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination
Acta Crystallographica Section D Biological Crystallography · 2008 · 10.1107/s090744490706595x
PSAIA – Protein Structure and Interaction Analyzer
BMC Structural Biology · 2008 · 10.1186/1472-6807-8-21
Current projects
No projects listed.