Niranjan Nagarajan

Research interests

Publications

• Metagenomics-enabled microbial surveillance

  Nature Microbiology · 2022 · https://doi.org/10.1038/s41564-022-01089-w

• Critical Assessment of Metagenome Interpretation: the second round of challenges

  Nature Methods · 2022 · https://doi.org/10.1038/s41592-022-01431-4

• A global metagenomic map of urban microbiomes and antimicrobial resistance

  Cell · 2021 · https://doi.org/10.1016/j.cell.2021.05.002

• Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

  Nature Medicine · 2020 · https://doi.org/10.1038/s41591-020-0894-4

• Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes

  Nature Biotechnology · 2019 · https://doi.org/10.1038/s41587-019-0191-2

• Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

  Cell · 2018 · https://doi.org/10.1016/j.cell.2018.03.033

• Comprehensive Characterization of Cancer Driver Genes and Mutations

  Cell · 2018 · https://doi.org/10.1016/j.cell.2018.02.060

• Fast and accurate de novo genome assembly from long uncorrected reads

  Genome Research · 2017 · https://doi.org/10.1101/gr.214270.116

• The draft genome of tropical fruit durian (Durio zibethinus)

  Nature Genetics · 2017 · https://doi.org/10.1038/ng.3972

• Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

  Nature Methods · 2017 · https://doi.org/10.1038/nmeth.4458

• In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

  Molecular Cell · 2016 · https://doi.org/10.1016/j.molcel.2016.04.028

• Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare

  Nature Microbiology · 2016 · https://doi.org/10.1038/nmicrobiol.2016.106

• Fast and sensitive mapping of nanopore sequencing reads with GraphMap

  Nature Communications · 2016 · https://doi.org/10.1038/ncomms11307

• Genus-Wide Comparative Genomics of Malassezia Delineates Its Phylogeny, Physiology, and Niche Adaptation on Human Skin

  PLoS Genetics · 2015 · https://doi.org/10.1371/journal.pgen.1005614

• Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls

  Proceedings of the National Academy of Sciences · 2014 · https://doi.org/10.1073/pnas.1404845111

• Sequence assembly demystified

  Nature Reviews Genetics · 2013 · https://doi.org/10.1038/nrg3367

• A common BIM deletion polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibitors in cancer

  Nature Medicine · 2012 · https://doi.org/10.1038/nm.2713

• Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly

  Nature Biotechnology · 2012 · https://doi.org/10.1038/nbt.2303

• The draft genome of sweet orange (Citrus sinensis)

  Nature Genetics · 2012 · https://doi.org/10.1038/ng.2472

• A Randomized, Double-Blind Placebo Controlled Trial of Balapiravir, a Polymerase Inhibitor, in Adult Dengue Patients

  The Journal of Infectious Diseases · 2012 · https://doi.org/10.1093/infdis/jis470

• LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets

  Nucleic Acids Research · 2012 · https://doi.org/10.1093/nar/gks918

• Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes

  Nature Genetics · 2012 · https://doi.org/10.1038/ng.2246

• Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

  PLoS Computational Biology · 2009 · https://doi.org/10.1371/journal.pcbi.1000352

• The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

  Nature · 2008 · https://doi.org/10.1038/nature06856

Current projects

No projects listed.