Shiyun Ling

Research interests

Publications

• A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples

  Cell · 2018 · https://doi.org/10.1016/j.cell.2018.03.027

• Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas

  Cancer Cell · 2018 · https://doi.org/10.1016/j.ccell.2018.03.010

• The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma

  Cell Reports · 2018 · https://doi.org/10.1016/j.celrep.2018.03.075

• A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers

  Cancer Cell · 2018 · https://doi.org/10.1016/j.ccell.2018.03.014

• An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

  Cell · 2018 · https://doi.org/10.1016/j.cell.2018.02.052

• Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types

  Cell Reports · 2018 · 10.1016/j.celrep.2018.01.088

• Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

  Cell Systems · 2018 · https://doi.org/10.1016/j.cels.2018.03.003

• Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

  Cell · 2018 · https://doi.org/10.1016/j.cell.2018.03.033

• Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers

  Cell Reports · 2018 · https://doi.org/10.1016/j.celrep.2018.03.077

• Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers

  Cell Reports · 2018 · https://doi.org/10.1016/j.celrep.2018.03.077

• Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer

  Cell · 2018 · https://doi.org/10.1016/j.cell.2018.03.022

• Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation

  Cell · 2018 · https://doi.org/10.1016/j.cell.2018.03.034

• Comprehensive Characterization of Cancer Driver Genes and Mutations

  Cell · 2018 · https://doi.org/10.1016/j.cell.2018.02.060

• Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas

  Cell Reports · 2018 · 10.1016/j.celrep.2018.03.076

• Genomic and Functional Approaches to Understanding Cancer Aneuploidy

  Cancer Cell · 2018 · 10.1016/j.ccell.2018.03.007

• Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images

  Cell Reports · 2018 · 10.1016/j.celrep.2018.03.086

• Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images

  Cell Reports · 2018 · 10.1016/j.celrep.2018.03.086

• Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

  Cancer Cell · 2018 · 10.1016/j.ccell.2018.07.001

• Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

  Cell Systems · 2018 · 10.1016/j.cels.2018.03.002

• Pathogenic Germline Variants in 10,389 Adult Cancers

  Cell · 2018 · 10.1016/j.cell.2018.03.039

• Driver Fusions and Their Implications in the Development and Treatment of Human Cancers

  Cell Reports · 2018 · 10.1016/j.celrep.2018.03.050

• Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer

  Cell Reports · 2018 · 10.1016/j.celrep.2018.10.001

• lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer

  Cancer Cell · 2018 · 10.1016/j.ccell.2018.03.006

• Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma

  Cancer Cell · 2017 · 10.1016/j.ccell.2017.01.001

• Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma

  Cancer Cell · 2017 · 10.1016/j.ccell.2017.07.007

• Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma

  Cell · 2016 · https://doi.org/10.1016/j.cell.2015.12.028

• Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas

  Nature Genetics · 2016 · 10.1038/ng.3564

• Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer

  Cell · 2015 · 10.1016/j.cell.2015.09.033

• A pan-cancer proteomic perspective on The Cancer Genome Atlas

  Nature Communications · 2014 · 10.1038/ncomms4887

Current projects

No projects listed.