Bùi Quang Minh

Research interests

Publications

• IQ-TREE 3: phylogenomic inference software using complex evolutionary models

  Molecular Biology and Evolution · 2026 · 10.1093/molbev/msag117

• IQ-TREE 3: phylogenomic inference software using complex evolutionary models

  Molecular Biology and Evolution · 2026 · 10.1093/molbev/msag117

• IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary Models

  EcoEvoRxiv · 2025 · 10.1093/molbev/msag117

• AliSim: A Fast and Versatile Phylogenetic Sequence Simulator for the Genomic Era

  Molecular Biology and Evolution · 2022 · 10.1093/molbev/msac092

• QMaker: Fast and Accurate Method to Estimate Empirical Models of Protein Evolution

  Systematic Biology · 2021 · 10.1093/sysbio/syab010

• Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution

  Nature Communications · 2020 · 10.1038/s41467-020-17408-w

• Corrigendum to: IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

  Molecular Biology and Evolution · 2020 · 10.1093/molbev/msaa131

• IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

  Molecular Biology and Evolution · 2020 · https://doi.org/10.1093/molbev/msaa015

• New Methods to Calculate Concordance Factors for Phylogenomic Datasets

  Molecular Biology and Evolution · 2020 · 10.1093/molbev/msaa106

• GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments

  Systematic Biology · 2019 · https://doi.org/10.1093/sysbio/syz051

• IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era

  bioRxiv (Cold Spring Harbor Laboratory) · 2019 · https://doi.org/10.1101/849372

• The Prevalence and Impact of Model Violations in Phylogenetic Analysis

  Genome Biology and Evolution · 2019 · 10.1093/gbe/evz193

• Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes

  Nature Communications · 2018 · 10.1038/s41467-018-03861-1

• MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

  BMC Evolutionary Biology · 2018 · https://doi.org/10.1186/s12862-018-1131-3

• ModelFinder: fast model selection for accurate phylogenetic estimates

  Nature Methods · 2017 · https://doi.org/10.1038/nmeth.4285

• UFBoot2: Improving the Ultrafast Bootstrap Approximation

  Molecular Biology and Evolution · 2017 · https://doi.org/10.1093/molbev/msx281

• Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation

  Systematic Biology · 2017 · 10.1093/sysbio/syx068

• Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista

  Proceedings of the Royal Society B Biological Sciences · 2016 · 10.1098/rspb.2015.2802

• Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

  Systematic Biology · 2016 · 10.1093/sysbio/syw037

• W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

  Nucleic Acids Research · 2016 · https://doi.org/10.1093/nar/gkw256

• The Phylogenetic Likelihood Library

  Systematic Biology · 2014 · https://doi.org/10.1093/sysbio/syu084

• IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

  Molecular Biology and Evolution · 2014 · https://doi.org/10.1093/molbev/msu300

• Decisive Data Sets in Phylogenomics: Lessons from Studies on the Phylogenetic Relationships of Primarily Wingless Insects

  Molecular Biology and Evolution · 2013 · 10.1093/molbev/mst196

• Ultrafast Approximation for Phylogenetic Bootstrap

  Molecular Biology and Evolution · 2013 · 10.1093/molbev/mst024

Current projects

No projects listed.