Fredrik Pontén

Research interests

Publications

• A single–cell type transcriptomics map of human tissues

  Science Advances · 2021 · https://doi.org/10.1126/sciadv.abh2169

• An atlas of the protein-coding genes in the human, pig, and mouse brain

  Science · 2020 · https://doi.org/10.1126/science.aay5947

• The human secretome

  Science Signaling · 2019 · 10.1126/scisignal.aaz0274

• A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

  Molecular Systems Biology · 2019 · https://doi.org/10.15252/msb.20188503

• A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

  Science · 2019 · https://doi.org/10.1126/science.aax9198

• A pathology atlas of the human cancer transcriptome

  Science · 2017 · https://doi.org/10.1126/science.aan2507

• A subcellular map of the human proteome

  Science · 2017 · https://doi.org/10.1126/science.aal3321

• Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

  Science · 2016 · https://doi.org/10.1126/science.aaf2403

• Gene‐specific correlation of RNA and protein levels in human cells and tissues

  Molecular Systems Biology · 2016 · 10.15252/msb.20167144

• Tissue-based map of the human proteome

  Science · 2015 · https://doi.org/10.1126/science.1260419

• Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

  Molecular & Cellular Proteomics · 2013 · https://doi.org/10.1074/mcp.m113.035600

• Antibodies for profiling the human proteome—The H uman P rotein A tlas as a resource for cancer research

  PROTEOMICS · 2012 · 10.1002/pmic.201100504

• The presence of tumor associated macrophages in tumor stroma as a prognostic marker for breast cancer patients

  BMC Cancer · 2012 · 10.1186/1471-2407-12-306

• Biomarker Discovery in Non–Small Cell Lung Cancer: Integrating Gene Expression Profiling, Meta-analysis, and Tissue Microarray Validation

  Clinical Cancer Research · 2012 · 10.1158/1078-0432.ccr-12-1139

• The Human Protein Atlas as a proteomic resource for biomarker discovery

  Journal of Internal Medicine · 2011 · 10.1111/j.1365-2796.2011.02427.x

• Towards a knowledge-based Human Protein Atlas

  Nature Biotechnology · 2010 · 10.1038/nbt1210-1248

• Prognostic Significance of Stromal Platelet-Derived Growth Factor β-Receptor Expression in Human Breast Cancer

  American Journal Of Pathology · 2009 · 10.2353/ajpath.2009.081030

• Correlations between RNA and protein expression profiles in 23 human cell lines

  BMC Genomics · 2009 · 10.1186/1471-2164-10-365

• The Human Protein Atlas—a tool for pathology

  The Journal of Pathology · 2008 · 10.1002/path.2440

• A Genecentric Human Protein Atlas for Expression Profiles Based on Antibodies

  Molecular & Cellular Proteomics · 2008 · 10.1074/mcp.r800013-mcp200

• A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

  Nature Genetics · 2008 · 10.1038/ng.185

• Antibody-based Proteomics for Human Tissue Profiling

  Molecular & Cellular Proteomics · 2005 · 10.1074/mcp.r500009-mcp200

• Towards a human proteome atlas: High‐throughput generation of mono‐specific antibodies for tissue profiling

  PROTEOMICS · 2005 · 10.1002/pmic.200500072

• A Human Protein Atlas for Normal and Cancer Tissues Based on Antibody Proteomics

  Molecular & Cellular Proteomics · 2005 · 10.1074/mcp.m500279-mcp200

• A High Frequency of Sequence Alterations Is Due to Formalin Fixation of Archival Specimens

  American Journal Of Pathology · 1999 · 10.1016/s0002-9440(10)65461-2

Current projects

No projects listed.