Lars Juhl Jensen

Research interests

Publications

• The STRING database in 2025: protein networks with directionality of regulation

  Nucleic Acids Research · 2024 · 10.1093/nar/gkae1113

• The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest

  Nucleic Acids Research · 2022 · https://doi.org/10.1093/nar/gkac1000

• The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

  Nucleic Acids Research · 2020 · https://doi.org/10.1093/nar/gkaa1074

• Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data

  Journal of Proteome Research · 2018 · https://doi.org/10.1021/acs.jproteome.8b00702

• eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

  Nucleic Acids Research · 2018 · https://doi.org/10.1093/nar/gky1085

• STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

  Nucleic Acids Research · 2018 · https://doi.org/10.1093/nar/gky1131

• Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

  Molecular Biology and Evolution · 2017 · 10.1093/molbev/msx148

• The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

  Nucleic Acids Research · 2016 · https://doi.org/10.1093/nar/gkw937

• STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data

  Nucleic Acids Research · 2015 · 10.1093/nar/gkv1277

• The SIDER database of drugs and side effects

  Nucleic Acids Research · 2015 · 10.1093/nar/gkv1075

• eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

  Nucleic Acids Research · 2015 · 10.1093/nar/gkv1248

• STRING v10: protein–protein interaction networks, integrated over the tree of life

  Nucleic Acids Research · 2014 · https://doi.org/10.1093/nar/gku1003

• eggNOG v4.0: nested orthology inference across 3686 organisms

  Nucleic Acids Research · 2013 · 10.1093/nar/gkt1253

• Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

  Nature · 2013 · 10.1038/nature12323

• Mining electronic health records: towards better research applications and clinical care

  Nature Reviews Genetics · 2012 · 10.1038/nrg3208

• STRING v9.1: protein-protein interaction networks, with increased coverage and integration

  Nucleic Acids Research · 2012 · 10.1093/nar/gks1094

• eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

  Nucleic Acids Research · 2011 · 10.1093/nar/gkr1060

• The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

  Nucleic Acids Research · 2010 · 10.1093/nar/gkq973

• Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis

  Science Signaling · 2010 · 10.1126/scisignal.2000475

• A side effect resource to capture phenotypic effects of drugs

  Molecular Systems Biology · 2010 · 10.1038/msb.2009.98

• Phospho.ELM: a database of phosphorylation sites--update 2011

  Nucleic Acids Research · 2010 · 10.1093/nar/gkq1104

• STRING 8--a global view on proteins and their functional interactions in 630 organisms

  Nucleic Acids Research · 2008 · 10.1093/nar/gkn760

• Drug Target Identification Using Side-Effect Similarity

  Science · 2008 · 10.1126/science.1158140

• Systematic Discovery of In Vivo Phosphorylation Networks

  Cell · 2007 · 10.1016/j.cell.2007.05.052

• STITCH: interaction networks of chemicals and proteins

  Nucleic Acids Research · 2007 · 10.1093/nar/gkm795

• STRING 7--recent developments in the integration and prediction of protein interactions

  Nucleic Acids Research · 2006 · 10.1093/nar/gkl825

• Proteome survey reveals modularity of the yeast cell machinery

  Nature · 2006 · 10.1038/nature04532

• Feature-based prediction of non-classical and leaderless protein secretion

  Protein Engineering Design and Selection · 2004 · 10.1093/protein/gzh037

• Protein Disorder Prediction

  Structure · 2003 · 10.1016/j.str.2003.10.002

Current projects

No projects listed.