Søren J. Sørensen

Research interests

Publications

• Critical Assessment of Metagenome Interpretation: the second round of challenges

  Nature Methods · 2022 · 10.1038/s41592-022-01431-4

• Large-scale association analyses identify host factors influencing human gut microbiome composition

  Nature Genetics · 2021 · https://doi.org/10.1038/s41588-020-00763-1

• Comparison of antibiotic-resistant bacteria and antibiotic resistance genes abundance in hospital and community wastewater: A systematic review

  The Science of The Total Environment · 2020 · 10.1016/j.scitotenv.2020.140804

• CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci

  The CRISPR Journal · 2020 · 10.1089/crispr.2020.0059

• Maturation of the gut microbiome and risk of asthma in childhood

  Nature Communications · 2018 · 10.1038/s41467-017-02573-2

• Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

  Nature Methods · 2017 · https://doi.org/10.1038/nmeth.4458

• Microbial indicators for soil quality

  Biology and Fertility of Soils · 2017 · 10.1007/s00374-017-1248-3

• It is elemental: soil nutrient stoichiometry drives bacterial diversity

  Environmental Microbiology · 2016 · 10.1111/1462-2920.13642

• Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

  Nature Biotechnology · 2014 · https://doi.org/10.1038/nbt.2939

• Interactions in multispecies biofilms: do they actually matter?

  Trends in Microbiology · 2014 · 10.1016/j.tim.2013.12.004

• Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community

  The ISME Journal · 2014 · 10.1038/ismej.2014.191

• High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation

  The ISME Journal · 2014 · 10.1038/ismej.2014.96

• The microbiome of New World vultures

  Nature Communications · 2014 · 10.1038/ncomms6498

• Loss of microbial diversity in soils is coincident with reductions in some specialized functions

  Environmental Microbiology · 2014 · 10.1111/1462-2920.12353

• 454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

  FEMS Microbiology Ecology · 2013 · https://doi.org/10.1111/1574-6941.12148

• Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse

  Diabetologia · 2012 · 10.1007/s00125-012-2564-7

• Gut Microbiota Composition Is Correlated to Grid Floor Induced Stress and Behavior in the BALB/c Mouse

  PLoS ONE · 2012 · 10.1371/journal.pone.0046231

• The interconnection between biofilm formation and horizontal gene transfer

  FEMS Immunology & Medical Microbiology · 2012 · 10.1111/j.1574-695x.2012.00960.x

• Biofilms in chronic infections – a matter of opportunity – monospecies biofilms in multispecies infections

  FEMS Immunology & Medical Microbiology · 2010 · 10.1111/j.1574-695x.2010.00714.x

• Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults

  PLoS ONE · 2010 · https://doi.org/10.1371/journal.pone.0009085

• Conjugative plasmids: vessels of the communal gene pool

  Philosophical Transactions of the Royal Society B Biological Sciences · 2009 · 10.1098/rstb.2009.0037

• Enhanced Biofilm Formation and Increased Resistance to Antimicrobial Agents and Bacterial Invasion Are Caused by Synergistic Interactions in Multispecies Biofilms

  Applied and Environmental Microbiology · 2006 · 10.1128/aem.03022-05

• Studying plasmid horizontal transfer in situ: a critical review

  Nature Reviews Microbiology · 2005 · 10.1038/nrmicro1232

• An examination of the biodiversity–ecosystem function relationship in arable soil microbial communities

  Soil Biology and Biochemistry · 2001 · 10.1016/s0038-0717(01)00094-3

• Ecosystem response of pasture soil communities to fumigation‐induced microbial diversity reductions: an examination of the biodiversity–ecosystem function relationship

  Oikos · 2000 · 10.1034/j.1600-0706.2000.900208.x

Current projects

No projects listed.