Johannes Schindelin

Researcher Next ID · RN-022015

Researcher · Biochemistry, Genetics and Molecular Biology

Redmond, Germany

Not currently recruitingFunding unknown

Research interests

Biochemistry, Genetics and Molecular Biology

Decision Sciences

Cell Image Analysis Techniques

Advanced Electron Microscopy Techniques and Applications

Genetics, Bioinformatics, and Biomedical Research

Advanced Fluorescence Microscopy Techniques

Scientific Computing and Data Management

ImageJ2: ImageJ for the next generation of scientific image data
BMC Bioinformatics · 2017 · https://doi.org/10.1186/s12859-017-1934-z
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification
Bioinformatics · 2017 · https://doi.org/10.1093/bioinformatics/btx180
TrackMate: An open and extensible platform for single-particle tracking
Methods · 2016 · https://doi.org/10.1016/j.ymeth.2016.09.016
Crowdsourcing the creation of image segmentation algorithms for connectomics
Frontiers in Neuroanatomy · 2015 · https://doi.org/10.3389/fnana.2015.00142
The ImageJ ecosystem: An open platform for biomedical image analysis
Molecular Reproduction and Development · 2015 · https://doi.org/10.1002/mrd.22489
A Doppler effect in embryonic pattern formation
Science · 2014 · https://doi.org/10.1126/science.1253089
OpenSPIM: an open-access light-sheet microscopy platform
Nature Methods · 2013 · https://doi.org/10.1038/nmeth.2507
Fiji: an open-source platform for biological-image analysis
Nature Methods · 2012 · 10.1038/nmeth.2019
TrakEM2 Software for Neural Circuit Reconstruction
PLoS ONE · 2012 · https://doi.org/10.1371/journal.pone.0038011
A high-level 3D visualization API for Java and ImageJ
BMC Bioinformatics · 2010 · https://doi.org/10.1186/1471-2105-11-274
Software for bead-based registration of selective plane illumination microscopy data
Nature Methods · 2010 · https://doi.org/10.1038/nmeth0610-418

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