Miten Jain

Research interests

Publications

• Multi-pass, single-molecule nanopore reading of long protein strands

  Nature · 2024 · 10.1038/s41586-024-07935-7

• A draft human pangenome reference

  Nature · 2023 · https://doi.org/10.1038/s41586-023-05896-x

• The complete sequence of a human Y chromosome

  Nature · 2023 · 10.1038/s41586-023-06457-y

• Pangenome graph construction from genome alignments with Minigraph-Cactus

  Nature Biotechnology · 2023 · 10.1038/s41587-023-01793-w

• Advances in nanopore direct RNA sequencing

  Nature Methods · 2022 · 10.1038/s41592-022-01633-w

• Semi-automated assembly of high-quality diploid human reference genomes

  Nature · 2022 · 10.1038/s41586-022-05325-5

• Epigenetic patterns in a complete human genome

  Science · 2022 · 10.1126/science.abj5089

• The complete sequence of a human genome

  Science · 2022 · https://doi.org/10.1126/science.abj6987

• PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions

  Cell Genomics · 2022 · 10.1016/j.xgen.2022.100129

• Ultrarapid Nanopore Genome Sequencing in a Critical Care Setting

  New England Journal of Medicine · 2022 · 10.1056/nejmc2112090

• Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads

  Nature Methods · 2021 · 10.1038/s41592-021-01299-w

• CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma

  Genome biology · 2020 · 10.1186/s13059-020-01995-4

• Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

  Nature Biotechnology · 2020 · 10.1038/s41587-020-0503-6

• Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing

  PLoS ONE · 2019 · 10.1371/journal.pone.0216709

• Nanopore native RNA sequencing of a human poly(A) transcriptome

  Nature Methods · 2019 · https://doi.org/10.1038/s41592-019-0617-2

• Linear assembly of a human centromere on the Y chromosome

  Nature Biotechnology · 2018 · 10.1038/nbt.4109

• Nanopore sequencing and assembly of a human genome with ultra-long reads

  Nature Biotechnology · 2018 · https://doi.org/10.1038/nbt.4060

• Mapping DNA methylation with high-throughput nanopore sequencing

  Nature Methods · 2017 · 10.1038/nmeth.4189

• Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells

  Nature Communications · 2017 · 10.1038/ncomms16027

• The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

  Genome biology · 2016 · https://doi.org/10.1186/s13059-016-1103-0

• Improved data analysis for the MinION nanopore sequencer

  Nature Methods · 2015 · 10.1038/nmeth.3290

• MinION Analysis and Reference Consortium: Phase 1 data release and analysis

  F1000Research · 2015 · 10.12688/f1000research.7201.1

• Centromere reference models for human chromosomes X and Y satellite arrays

  Genome Research · 2014 · 10.1101/gr.159624.113

• Cancer vaccines and carbohydrate epitopes

  Vaccine · 2011 · 10.1016/j.vaccine.2011.09.009

Current projects

No projects listed.