Quaid Morris

Research interests

Publications

• Colorectal Cancer Cells Enter a Diapause-like DTP State to Survive Chemotherapy

  Cell · 2021 · 10.1016/j.cell.2020.11.018

• Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

  Cell · 2021 · https://doi.org/10.1016/j.cell.2021.03.009

• A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

  Nature Communications · 2020 · https://doi.org/10.1038/s41467-019-13825-8

• High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies

  Molecular Cell · 2018 · 10.1016/j.molcel.2017.12.020

• GeneMANIA update 2018

  Nucleic Acids Research · 2018 · https://doi.org/10.1093/nar/gky311

• PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors

  Genome biology · 2015 · 10.1186/s13059-015-0602-8

• The human splicing code reveals new insights into the genetic determinants of disease

  Science · 2014 · https://doi.org/10.1126/science.1254806

• Evaluation of methods for modeling transcription factor sequence specificity

  Nature Biotechnology · 2013 · 10.1038/nbt.2486

• GeneMANIA Prediction Server 2013 Update

  Nucleic Acids Research · 2013 · 10.1093/nar/gkt533

• A compendium of RNA-binding motifs for decoding gene regulation

  Nature · 2013 · https://doi.org/10.1038/nature12311

• GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop

  Bioinformatics · 2010 · 10.1093/bioinformatics/btq562

• The Genetic Landscape of a Cell

  Science · 2010 · 10.1126/science.1180823

• Cytoscape Web: an interactive web-based network browser

  Bioinformatics · 2010 · 10.1093/bioinformatics/btq430

• The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

  Nucleic Acids Research · 2010 · https://doi.org/10.1093/nar/gkq537

• RBPDB: a database of RNA-binding specificities

  Nucleic Acids Research · 2010 · 10.1093/nar/gkq1069

• Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

  Nature Biotechnology · 2009 · 10.1038/nbt.1550

• Dynamic modularity in protein interaction networks predicts breast cancer outcome

  Nature Biotechnology · 2009 · 10.1038/nbt.1522

• Diversity and Complexity in DNA Recognition by Transcription Factors

  Science · 2009 · 10.1126/science.1162327

• Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

  Cell · 2008 · 10.1016/j.cell.2008.05.024

• GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

  Genome biology · 2008 · 10.1186/gb-2008-9-s1-s4

• Using expression profiling data to identify human microRNA targets

  Nature Methods · 2007 · 10.1038/nmeth1130

• FOXP3 Is an X-Linked Breast Cancer Suppressor Gene and an Important Repressor of the HER-2/ErbB2 Oncogene

  Cell · 2007 · 10.1016/j.cell.2007.04.034

• Global Survey of Organ and Organelle Protein Expression in Mouse: Combined Proteomic and Transcriptomic Profiling

  Cell · 2006 · 10.1016/j.cell.2006.01.044

• Exploration of Essential Gene Functions via Titratable Promoter Alleles

  Cell · 2004 · 10.1016/j.cell.2004.06.013

• Probing microRNAs with microarrays: Tissue specificity and functional inference

  RNA · 2004 · 10.1261/rna.7119904

• Revealing Global Regulatory Features of Mammalian Alternative Splicing Using a Quantitative Microarray Platform

  Molecular Cell · 2004 · 10.1016/j.molcel.2004.12.004

Current projects

No projects listed.