Paul Flicek

Research interests

Publications

• GENCODE: reference annotation for the human and mouse genomes in 2023

  Nucleic Acids Research · 2022 · https://doi.org/10.1093/nar/gkac1071

• Ensembl 2023

  Nucleic Acids Research · 2022 · https://doi.org/10.1093/nar/gkac958

• The IPD-IMGT/HLA Database

  Nucleic Acids Research · 2022 · 10.1093/nar/gkac1011

• Ensembl 2022

  Nucleic Acids Research · 2021 · https://doi.org/10.1093/nar/gkab1049

• Haplotype-resolved diverse human genomes and integrated analysis of structural variation

  Science · 2021 · https://doi.org/10.1126/science.abf7117

• Towards complete and error-free genome assemblies of all vertebrate species

  Nature · 2021 · https://doi.org/10.1038/s41586-021-03451-0

• Ensembl 2021

  Nucleic Acids Research · 2020 · 10.1093/nar/gkaa942

• GENCODE 2021

  Nucleic Acids Research · 2020 · 10.1093/nar/gkaa1087

• Multi-platform discovery of haplotype-resolved structural variation in human genomes

  Nature Communications · 2019 · 10.1038/s41467-018-08148-z

• Ensembl 2020

  Nucleic Acids Research · 2019 · 10.1093/nar/gkz966

• Ensembl Genomes 2020—enabling non-vertebrate genomic research

  Nucleic Acids Research · 2019 · 10.1093/nar/gkz890

• The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019

  Nucleic Acids Research · 2018 · https://doi.org/10.1093/nar/gky1120

• Ensembl 2019

  Nucleic Acids Research · 2018 · 10.1093/nar/gky1113

• GENCODE reference annotation for the human and mouse genomes

  Nucleic Acids Research · 2018 · https://doi.org/10.1093/nar/gky955

• Ensembl 2018

  Nucleic Acids Research · 2017 · 10.1093/nar/gkx1098

• Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

  Genome Research · 2017 · 10.1101/gr.213611.116

• Ensembl 2017

  Nucleic Acids Research · 2016 · 10.1093/nar/gkw1104

• The Ensembl Variant Effect Predictor

  Genome biology · 2016 · https://doi.org/10.1186/s13059-016-0974-4

• High-throughput discovery of novel developmental phenotypes

  Nature · 2016 · 10.1038/nature19356

• The Ensembl gene annotation system

  Database · 2016 · 10.1093/database/baw093

• The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)

  Nucleic Acids Research · 2016 · 10.1093/nar/gkw1133

• Ensembl 2016

  Nucleic Acids Research · 2015 · 10.1093/nar/gkv1157

• An integrated map of structural variation in 2,504 human genomes

  Nature · 2015 · 10.1038/nature15394

• A global reference for human genetic variation

  Nature · 2015 · https://doi.org/10.1038/nature15393

• The UK10K project identifies rare variants in health and disease

  Nature · 2015 · 10.1038/nature14962

• The IPD and IMGT/HLA database: allele variant databases

  Nucleic Acids Research · 2014 · 10.1093/nar/gku1161

• A comparative encyclopedia of DNA elements in the mouse genome

  Nature · 2014 · 10.1038/nature13992

• Ensembl 2015

  Nucleic Acids Research · 2014 · 10.1093/nar/gku1010

• Ensembl 2014

  Nucleic Acids Research · 2013 · 10.1093/nar/gkt1196

• Transcriptome and genome sequencing uncovers functional variation in humans

  Nature · 2013 · 10.1038/nature12531

• The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

  Nucleic Acids Research · 2013 · 10.1093/nar/gkt1229

• De novo assembly and genotyping of variants using colored de Bruijn graphs

  Nature Genetics · 2012 · 10.1038/ng.1028

• Insights into hominid evolution from the gorilla genome sequence

  Nature · 2012 · 10.1038/nature10842

• Ensembl 2013

  Nucleic Acids Research · 2012 · 10.1093/nar/gks1236

• Ensembl BioMarts: a hub for data retrieval across taxonomic space

  Database · 2011 · 10.1093/database/bar030

• Comparative and demographic analysis of orang-utan genomes

  Nature · 2011 · 10.1038/nature09687

• The genome of a songbird

  Nature · 2010 · 10.1038/nature08819

• Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

  Bioinformatics · 2010 · 10.1093/bioinformatics/btq330

• Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

  Nature · 2007 · https://doi.org/10.1038/nature05874

Current projects

No projects listed.