Kevin W. Eliceiri

Research interests

Publications

• Dual-stream Multiple Instance Learning Network for Whole Slide Image Classification with Self-supervised Contrastive Learning

  · 2021 · 10.1109/cvpr46437.2021.01409

• The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis

  Protein Science · 2020 · 10.1002/pro.3993

• Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification

  Bioinformatics · 2017 · https://doi.org/10.1093/bioinformatics/btx180

• ImageJ2: ImageJ for the next generation of scientific image data

  BMC Bioinformatics · 2017 · https://doi.org/10.1186/s12859-017-1934-z

• Beyond the margins: real-time detection of cancer using targeted fluorophores

  Nature Reviews Clinical Oncology · 2017 · 10.1038/nrclinonc.2016.212

• TrackMate: An open and extensible platform for single-particle tracking

  Methods · 2016 · https://doi.org/10.1016/j.ymeth.2016.09.016

• The ImageJ ecosystem: An open platform for biomedical image analysis

  Molecular Reproduction and Development · 2015 · https://doi.org/10.1002/mrd.22489

• Computational segmentation of collagen fibers from second-harmonic generation images of breast cancer

  Journal of Biomedical Optics · 2014 · 10.1117/1.jbo.19.1.016007

• 3D Collagen Alignment Limits Protrusions to Enhance Breast Cancer Cell Persistence

  Biophysical Journal · 2014 · 10.1016/j.bpj.2014.10.035

• The collagen receptor discoidin domain receptor 2 stabilizes SNAIL1 to facilitate breast cancer metastasis

  Nature Cell Biology · 2013 · 10.1038/ncb2743

• OpenSPIM: an open-access light-sheet microscopy platform

  Nature Methods · 2013 · 10.1038/nmeth.2507

• NIH Image to ImageJ: 25 years of image analysis

  Nature Methods · 2012 · https://doi.org/10.1038/nmeth.2089

• Biological imaging software tools

  Nature Methods · 2012 · 10.1038/nmeth.2084

• Fiji: an open-source platform for biological-image analysis

  Nature Methods · 2012 · https://doi.org/10.1038/nmeth.2019

• Postpartum mammary gland involution drives progression of ductal carcinoma in situ through collagen and COX-2

  Nature Medicine · 2011 · 10.1038/nm.2416

• Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

  Bioinformatics · 2011 · 10.1093/bioinformatics/btr095

• Aligned Collagen Is a Prognostic Signature for Survival in Human Breast Carcinoma

  American Journal Of Pathology · 2011 · 10.1016/j.ajpath.2010.11.076

• Metadata matters: access to image data in the real world

  The Journal of Cell Biology · 2010 · 10.1083/jcb.201004104

• Matrix density-induced mechanoregulation of breast cell phenotype, signaling and gene expression through a FAK–ERK linkage

  Oncogene · 2009 · 10.1038/onc.2009.299

• Collagen density promotes mammary tumor initiation and progression

  BMC Medicine · 2008 · 10.1186/1741-7015-6-11

• Contact Guidance Mediated Three-Dimensional Cell Migration is Regulated by Rho/ROCK-Dependent Matrix Reorganization

  Biophysical Journal · 2008 · 10.1529/biophysj.108.133116

• In vivo multiphoton microscopy of NADH and FAD redox states, fluorescence lifetimes, and cellular morphology in precancerous epithelia

  Proceedings of the National Academy of Sciences · 2007 · 10.1073/pnas.0708425104

• In vivo multiphoton fluorescence lifetime imaging of protein-bound and free nicotinamide adenine dinucleotide in normal and precancerous epithelia

  Journal of Biomedical Optics · 2007 · 10.1117/1.2717503

• Collagen reorganization at the tumor-stromal interface facilitates local invasion

  BMC Medicine · 2006 · 10.1186/1741-7015-4-38

• Metabolic Mapping of MCF10A Human Breast Cells via Multiphoton Fluorescence Lifetime Imaging of the Coenzyme NADH

  Cancer Research · 2005 · 10.1158/0008-5472.can-04-3922

Current projects

No projects listed.