Huixiao Hong

Research interests

Publications

• Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing

  Nature Biotechnology · 2021 · https://doi.org/10.1038/s41587-021-00994-5

• CoMPARA: Collaborative Modeling Project for Androgen Receptor Activity

  Environmental Health Perspectives · 2020 · https://doi.org/10.1289/ehp5580

• Persistent Organic Pollutants in Food: Contamination Sources, Health Effects and Detection Methods

  International Journal of Environmental Research and Public Health · 2019 · https://doi.org/10.3390/ijerph16224361

• CERAPP: Collaborative Estrogen Receptor Activity Prediction Project

  Environmental Health Perspectives · 2016 · https://doi.org/10.1289/ehp.1510267

• Comparison of RNA-seq and microarray-based models for clinical endpoint prediction

  Genome biology · 2015 · https://doi.org/10.1186/s13059-015-0694-1

• The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

  Nature Biotechnology · 2014 · https://doi.org/10.1038/nbt.3001

• A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

  Nature Biotechnology · 2014 · https://doi.org/10.1038/nbt.2957

• A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages

  Nature Communications · 2014 · https://doi.org/10.1038/ncomms4230

• The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

  Nature Biotechnology · 2010 · https://doi.org/10.1038/nbt.1665

• A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

  The Pharmacogenomics Journal · 2010 · https://doi.org/10.1038/tpj.2010.57

• The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

  BMC Bioinformatics · 2008 · https://doi.org/10.1186/1471-2105-9-s9-s10

• Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics

  Journal of Chemical Information and Modeling · 2008 · https://doi.org/10.1021/ci800038f

• The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

  Nature Biotechnology · 2006 · https://doi.org/10.1038/nbt1239

• Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential

  BMC Bioinformatics · 2005 · https://doi.org/10.1186/1471-2105-6-s2-s12

• Decision Forest: Combining the Predictions of Multiple Independent Decision Tree Models

  Journal of Chemical Information and Computer Sciences · 2003 · https://doi.org/10.1021/ci020058s

• Study of 202 Natural, Synthetic, and Environmental Chemicals for Binding to the Androgen Receptor

  Chemical Research in Toxicology · 2003 · https://doi.org/10.1021/tx030011g

• Fate and assessment of persistent organic pollutants in water and sediment from Minjiang River Estuary, Southeast China

  Chemosphere · 2003 · https://doi.org/10.1016/s0045-6535(03)00478-8

• ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research.

  Environmental Health Perspectives · 2003 · https://doi.org/10.1289/ehp.6497

• Contamination by polycyclic aromatic hydrocarbons in the Jiulong River Estuary and Western Xiamen Sea, China

  Environmental Pollution · 2002 · https://doi.org/10.1016/s0269-7491(01)00208-1

• Polychlorinated biphenyl congeners and organochlorine insecticides in the water column and sediments of Daya Bay, China

  Environmental Pollution · 2001 · https://doi.org/10.1016/s0269-7491(00)00180-9

• Multi-phase distribution of organic micropollutants in Xiamen Harbour, China

  Water Research · 2000 · https://doi.org/10.1016/s0043-1354(99)00360-7

• Coumarin-Based Inhibitors of HIV Integrase

  Journal of Medicinal Chemistry · 1997 · https://doi.org/10.1021/jm960450v

• Depsides and Depsidones as Inhibitors of HIV-1 Integrase: Discovery of Novel Inhibitors through 3D Database Searching

  Journal of Medicinal Chemistry · 1997 · https://doi.org/10.1021/jm960759e

• Special guest paper

  Marine Pollution Bulletin · 1995 · https://doi.org/10.1016/0025-326x(95)00115-4

Current projects

No projects listed.