Dirk Gevers

Research interests

Publications

• American Gut: an Open Platform for Citizen Science Microbiome Research

  mSystems · 2018 · https://doi.org/10.1128/msystems.00031-18

• The human gut microbiome in early-onset type 1 diabetes from the TEDDY study

  Nature · 2018 · https://doi.org/10.1038/s41586-018-0620-2

• Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine

  Science · 2017 · https://doi.org/10.1126/science.aah5043

• Ectopic colonization of oral bacteria in the intestine drives T H 1 cell induction and inflammation

  Science · 2017 · https://doi.org/10.1126/science.aan4526

• A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

  Genome Medicine · 2017 · 10.1186/s13073-017-0490-5

• Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

  Science · 2016 · 10.1126/science.aad3369

• Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease

  Gut · 2016 · 10.1136/gutjnl-2016-312135

• Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

  Cell · 2016 · https://doi.org/10.1016/j.cell.2016.04.007

• Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

  Cell · 2015 · 10.1016/j.cell.2015.01.002

• The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids

  Circulation Research · 2015 · 10.1161/circresaha.115.306807

• The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes

  Cell Host & Microbe · 2015 · 10.1016/j.chom.2015.01.001

• The Microbiome in Inflammatory Bowel Disease: Current Status and the Future Ahead

  Gastroenterology · 2014 · 10.1053/j.gastro.2014.02.009

• The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

  Cell Host & Microbe · 2014 · 10.1016/j.chom.2014.02.005

• Complex host genetics influence the microbiome in inflammatory bowel disease

  Genome Medicine · 2014 · https://doi.org/10.1186/s13073-014-0107-1

• Relating the metatranscriptome and metagenome of the human gut

  Proceedings of the National Academy of Sciences · 2014 · https://doi.org/10.1073/pnas.1319284111

• Sequence-Based Discovery of Bradyrhizobium enterica in Cord Colitis Syndrome

  New England Journal of Medicine · 2013 · https://doi.org/10.1056/nejmoa1211115

• Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

  Nature Methods · 2012 · 10.1038/nmeth.2276

• Structure, function and diversity of the healthy human microbiome

  Nature · 2012 · 10.1038/nature11234

• A framework for human microbiome research

  Nature · 2012 · 10.1038/nature11209

• Microbial Co-occurrence Relationships in the Human Microbiome

  PLoS Computational Biology · 2012 · 10.1371/journal.pcbi.1002606

• Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

  Genome biology · 2012 · https://doi.org/10.1186/gb-2012-13-3-r23

• Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

  Genome biology · 2012 · 10.1186/gb-2012-13-9-r79

• Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

  Genome Research · 2011 · 10.1101/gr.112730.110

• Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

  Nature Biotechnology · 2011 · 10.1038/nbt.1823

• Genomic analysis identifies association of Fusobacterium with colorectal carcinoma

  Genome Research · 2011 · 10.1101/gr.126573.111

• A Catalog of Reference Genomes from the Human Microbiome

  Science · 2010 · https://doi.org/10.1126/science.1183605

• Re-evaluating prokaryotic species

  Nature Reviews Microbiology · 2005 · https://doi.org/10.1038/nrmicro1236

Current projects

No projects listed.