Jarkko Salojärvi

Research interests

Publications

• Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars

  Nature Genetics · 2022 · 10.1038/s41588-021-00971-3

• Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

  eLife · 2019 · 10.7554/elife.43284

• The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation

  Proceedings of the National Academy of Sciences · 2019 · 10.1073/pnas.1822129116

• Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

  eLife · 2019 · 10.7554/elife.43284

• Microbial shifts and signatures of long-term remission in ulcerative colitis after faecal microbiota transplantation

  The ISME Journal · 2017 · 10.1038/ismej.2017.44

• Improvement of Insulin Sensitivity after Lean Donor Feces in Metabolic Syndrome Is Driven by Baseline Intestinal Microbiota Composition

  Cell Metabolism · 2017 · https://doi.org/10.1016/j.cmet.2017.09.008

• Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

  Nature Genetics · 2017 · 10.1038/ng.3862

• Durable coexistence of donor and recipient strains after fecal microbiota transplantation

  Science · 2016 · 10.1126/science.aad8852

• Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children

  The ISME Journal · 2015 · 10.1038/ismej.2015.177

• Large-Scale Phenomics Identifies Primary and Fine-Tuning Roles for CRKs in Responses Related to Oxidative Stress

  PLoS Genetics · 2015 · 10.1371/journal.pgen.1005373

• Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children

  The ISME Journal · 2015 · 10.1038/ismej.2015.177

• Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database

  BMC Genomics · 2015 · https://doi.org/10.1186/s12864-015-2265-y

• PLETHORA gradient formation mechanism separates auxin responses

  Nature · 2014 · 10.1038/nature13663

• The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

  Nature Communications · 2014 · 10.1038/ncomms5737

• Tipping elements in the human intestinal ecosystem

  Nature Communications · 2014 · 10.1038/ncomms5344

• Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

  The ISME Journal · 2014 · https://doi.org/10.1038/ismej.2014.63

• Effects of bowel cleansing on the intestinal microbiota

  Gut · 2014 · 10.1136/gutjnl-2014-307240

• Intestinal Microbiota in Healthy U.S. Young Children and Adults—A High Throughput Microarray Analysis

  PLoS ONE · 2013 · 10.1371/journal.pone.0064315

• Faecal microbiota composition and host–microbe cross-talk following gastroenteritis and in postinfectious irritable bowel syndrome

  Gut · 2013 · 10.1136/gutjnl-2013-305994

• Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data

  PeerJ · 2013 · 10.7717/peerj.32

• Comparative Metaproteomics and Diversity Analysis of Human Intestinal Microbiota Testifies for Its Temporal Stability and Expression of Core Functions

  PLoS ONE · 2012 · 10.1371/journal.pone.0029913

• Transfer of Intestinal Microbiota From Lean Donors Increases Insulin Sensitivity in Individuals With Metabolic Syndrome

  Gastroenterology · 2012 · https://doi.org/10.1053/j.gastro.2012.06.031

• Apoplastic Reactive Oxygen Species Transiently Decrease Auxin Signaling and Cause Stress-Induced Morphogenic Response in Arabidopsis

  PLANT PHYSIOLOGY · 2011 · 10.1104/pp.111.181883

• Ozone-triggered rapid stomatal response involves the production of reactive oxygen species, and is controlled by SLAC1 and OST1

  The Plant Journal · 2010 · 10.1111/j.1365-313x.2010.04159.x

• Transcriptional regulation of the CRK/DUF26 group of Receptor-like protein kinases by ozone and plant hormones in Arabidopsis

  BMC Plant Biology · 2010 · 10.1186/1471-2229-10-95

• Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors

  The Plant Journal · 2009 · 10.1111/j.1365-313x.2009.03951.x

• Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors

  The Plant Journal · 2009 · 10.1111/j.1365-313x.2009.03951.x

• Self organization of a massive document collection

  IEEE Transactions on Neural Networks · 2000 · https://doi.org/10.1109/72.846729

Current projects

No projects listed.