Wei Shi

Research interests

Publications

• The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads

  Nucleic Acids Research · 2019 · https://doi.org/10.1093/nar/gkz114

• Transcription Factor IRF4 Promotes CD8+ T Cell Exhaustion and Limits the Development of Memory-like T Cells during Chronic Infection

  Immunity · 2017 · https://doi.org/10.1016/j.immuni.2017.11.021

• A molecular threshold for effector CD8+ T cell differentiation controlled by transcription factors Blimp-1 and T-bet

  Nature Immunology · 2016 · https://doi.org/10.1038/ni.3410

• Hobit and Blimp1 instruct a universal transcriptional program of tissue residency in lymphocytes

  Science · 2016 · https://doi.org/10.1126/science.aad2035

• limma powers differential expression analyses for RNA-sequencing and microarray studies

  Nucleic Acids Research · 2015 · https://doi.org/10.1093/nar/gkv007

• voom: precision weights unlock linear model analysis tools for RNA-seq read counts

  Genome biology · 2014 · https://doi.org/10.1186/gb-2014-15-2-r29

• A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

  Nature Biotechnology · 2014 · 10.1038/nbt.2957

• The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

  Nucleic Acids Research · 2013 · https://doi.org/10.1093/nar/gkt214

• featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

  Bioinformatics · 2013 · https://doi.org/10.1093/bioinformatics/btt656

• The transcription factors Blimp-1 and IRF4 jointly control the differentiation and function of effector regulatory T cells

  Nature Immunology · 2011 · 10.1038/ni.2006

Current projects

No projects listed.