Jun S. Liu

Research interests

Publications

• TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells

  Cancer Research · 2017 · https://doi.org/10.1158/0008-5472.can-17-0307

• Correction: Corrigendum: Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

  Scientific Reports · 2016 · https://doi.org/10.1038/srep19384

• Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

  Genome biology · 2016 · https://doi.org/10.1186/s13059-016-1028-7

• Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR

  Genome biology · 2015 · 10.1186/s13059-015-0843-6

• Sequence determinants of improved CRISPR sgRNA design

  Genome Research · 2015 · 10.1101/gr.191452.115

• MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens

  Genome biology · 2014 · https://doi.org/10.1186/s13059-014-0554-4

• Genetics of rheumatoid arthritis contributes to biology and drug discovery

  Nature · 2013 · https://doi.org/10.1038/nature12873

• Topological domains in mammalian genomes identified by analysis of chromatin interactions

  Nature · 2012 · 10.1038/nature11082

• Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

  The Plant Cell · 2012 · 10.1105/tpc.112.102855

• Monte Carlo Strategies in Scientific Computing

  Springer series in statistics · 2004 · 10.1007/978-0-387-76371-2

• The Spo0A regulon of Bacillus subtilis

  Molecular Microbiology · 2003 · 10.1046/j.1365-2958.2003.03818.x

• Partition-Ligation–Expectation-Maximization Algorithm for Haplotype Inference with Single-Nucleotide Polymorphisms

  The American Journal of Human Genetics · 2002 · 10.1086/344207

• Methylation of histone H3 Lys 4 in coding regions of active genes

  Proceedings of the National Academy of Sciences · 2002 · 10.1073/pnas.082249499

• An algorithm for finding protein–DNA binding sites with applications to chromatin- immunoprecipitation microarray experiments

  Nature Biotechnology · 2002 · 10.1038/nbt717

• Bayesian Haplotype Inference for Multiple Linked Single-Nucleotide Polymorphisms

  The American Journal of Human Genetics · 2002 · 10.1086/338446

• Mixture Kalman Filters

  Journal of the Royal Statistical Society Series B (Statistical Methodology) · 2000 · 10.1111/1467-9868.00246

• BIOPROSPECTOR: DISCOVERING CONSERVED DNA MOTIFS IN UPSTREAM REGULATORY REGIONS OF CO-EXPRESSED GENES

  · 2000 · 10.1142/9789814447362_0014

• Sequential Monte Carlo Methods for Dynamic Systems

  Journal of the American Statistical Association · 1998 · 10.1080/01621459.1998.10473765

• Sequential Monte Carlo Methods for Dynamic Systems

  Journal of the American Statistical Association · 1998 · 10.2307/2669847

• Metropolized independent sampling with comparisons to rejection sampling and importance sampling

  Statistics and Computing · 1996 · 10.1007/bf00162521

• Sequential Imputations and Bayesian Missing Data Problems

  Journal of the American Statistical Association · 1994 · 10.1080/01621459.1994.10476469

• Covariance structure of the Gibbs sampler with applications to the comparisons of estimators and augmentation schemes

  Biometrika · 1994 · 10.1093/biomet/81.1.27

• The Collapsed Gibbs Sampler in Bayesian Computations with Applications to a Gene Regulation Problem

  Journal of the American Statistical Association · 1994 · 10.1080/01621459.1994.10476829

• Detecting Subtle Sequence Signals: a Gibbs Sampling Strategy for Multiple Alignment

  Science · 1993 · 10.1126/science.8211139

• Calcineurin is a common target of cyclophilin-cyclosporin A and FKBP-FK506 complexes

  Cell · 1991 · 10.1016/0092-8674(91)90124-h

Current projects

No projects listed.