Paul D. Cotter

Research interests

Publications

• Examining the healthy human microbiome concept

  Nature Reviews Microbiology · 2024 · https://doi.org/10.1038/s41579-024-01107-0

• The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on fermented foods

  Nature Reviews Gastroenterology & Hepatology · 2021 · https://doi.org/10.1038/s41575-020-00390-5

• Gut microbes from the phylogenetically diverse genus Eubacterium and their various contributions to gut health

  Gut Microbes · 2020 · 10.1080/19490976.2020.1802866

• Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome

  Nature Communications · 2020 · https://doi.org/10.1038/s41467-020-16438-8

• Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants

  mSystems · 2020 · https://doi.org/10.1128/msystems.00522-20

• A Prospective Metagenomic and Metabolomic Analysis of the Impact of Exercise and/or Whey Protein Supplementation on the Gut Microbiome of Sedentary Adults

  mSystems · 2018 · https://doi.org/10.1128/msystems.00044-18

• Exploring a Possible Link between the Intestinal Microbiota and Feed Efficiency in Pigs

  Applied and Environmental Microbiology · 2017 · https://doi.org/10.1128/aem.00380-17

• The altered gut microbiota in adults with cystic fibrosis

  BMC Microbiology · 2017 · https://doi.org/10.1186/s12866-017-0968-8

• Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir

  mSystems · 2016 · https://doi.org/10.1128/msystems.00052-16

• Spatial variation of the colonic microbiota in patients with ulcerative colitis and control volunteers

  Gut · 2015 · https://doi.org/10.1136/gutjnl-2014-307873

• N-3 Polyunsaturated Fatty Acids (PUFAs) Reverse the Impact of Early-Life Stress on the Gut Microbiota

  PLoS ONE · 2015 · https://doi.org/10.1371/journal.pone.0139721

• Prenatal stress-induced alterations in major physiological systems correlate with gut microbiota composition in adulthood

  Psychoneuroendocrinology · 2015 · https://doi.org/10.1016/j.psyneuen.2015.06.002

• Gut microbiota depletion from early adolescence in mice: Implications for brain and behaviour

  Brain Behavior and Immunity · 2015 · 10.1016/j.bbi.2015.04.004

• Nucleic acid-based approaches to investigate microbial-related cheese quality defects

  Frontiers in Microbiology · 2013 · https://doi.org/10.3389/fmicb.2013.00001

• The complex microbiota of raw milk

  FEMS Microbiology Reviews · 2013 · https://doi.org/10.1111/1574-6976.12030

• Sequence-based analysis of the bacterial and fungal compositions of multiple kombucha (tea fungus) samples

  Food Microbiology · 2013 · https://doi.org/10.1016/j.fm.2013.09.003

• Antipsychotics and the gut microbiome: olanzapine-induced metabolic dysfunction is attenuated by antibiotic administration in the rat

  Translational Psychiatry · 2013 · https://doi.org/10.1038/tp.2013.83

• Sequencing-Based Analysis of the Bacterial and Fungal Composition of Kefir Grains and Milks from Multiple Sources

  PLoS ONE · 2013 · https://doi.org/10.1371/journal.pone.0069371

• The microbial content of raw and pasteurized cow milk as determined by molecular approaches

  Journal of Dairy Science · 2013 · https://doi.org/10.3168/jds.2013-6688

• Targeting the Microbiota to Address Diet-Induced Obesity: A Time Dependent Challenge

  PLoS ONE · 2013 · https://doi.org/10.1371/journal.pone.0065790

• Bacteriocins — a viable alternative to antibiotics?

  Nature Reviews Microbiology · 2012 · https://doi.org/10.1038/nrmicro2937

• High-Throughput Sequencing for Detection of Subpopulations of Bacteria Not Previously Associated with Artisanal Cheeses

  Applied and Environmental Microbiology · 2012 · https://doi.org/10.1128/aem.00918-12

• High-Throughput Sequencing Reveals the Incomplete, Short-Term Recovery of Infant Gut Microbiota following Parenteral Antibiotic Treatment with Ampicillin and Gentamicin

  Antimicrobial Agents and Chemotherapy · 2012 · https://doi.org/10.1128/aac.00789-12

• Gender-dependent consequences of chronic olanzapine in the rat: effects on body weight, inflammatory, metabolic and microbiota parameters

  Psychopharmacology · 2012 · https://doi.org/10.1007/s00213-011-2555-2

• Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature

  Natural Product Reports · 2012 · https://doi.org/10.1039/c2np20085f

• Bacteriocin Production: a Probiotic Trait?

  Applied and Environmental Microbiology · 2011 · 10.1128/aem.05576-11

• Molecular approaches to analysing the microbial composition of raw milk and raw milk cheese

  International Journal of Food Microbiology · 2011 · https://doi.org/10.1016/j.ijfoodmicro.2011.08.001

• High-throughput sequence-based analysis of the bacterial composition of kefir and an associated kefir grain

  FEMS Microbiology Letters · 2011 · https://doi.org/10.1111/j.1574-6968.2011.02290.x

• Effect of broad- and narrow-spectrum antimicrobials on Clostridium difficile and microbial diversity in a model of the distal colon

  Proceedings of the National Academy of Sciences · 2010 · https://doi.org/10.1073/pnas.1001224107

• Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models

  Gut · 2010 · 10.1136/gut.2010.215665

• Bacteriocins: Biological tools for bio-preservation and shelf-life extension

  International Dairy Journal · 2006 · 10.1016/j.idairyj.2005.10.026

• Bacteriocins: developing innate immunity for food

  Nature Reviews Microbiology · 2005 · https://doi.org/10.1038/nrmicro1273

• Surviving the Acid Test: Responses of Gram-Positive Bacteria to Low pH

  Microbiology and Molecular Biology Reviews · 2003 · https://doi.org/10.1128/mmbr.67.3.429-453.2003

Current projects

No projects listed.