Daniel S. Rokhsar

Research interests

Publications

• Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)

  Proceedings of the National Academy of Sciences · 2017 · https://doi.org/10.1073/pnas.1703088114

• Genome evolution in the allotetraploid frog Xenopus laevis

  Nature · 2016 · https://doi.org/10.1038/nature19840

• The octopus genome and the evolution of cephalopod neural and morphological novelties

  Nature · 2015 · https://doi.org/10.1038/nature14668

• The genome of Eucalyptus grandis

  Nature · 2014 · https://doi.org/10.1038/nature13308

• A reference genome for common bean and genome-wide analysis of dual domestications

  Nature Genetics · 2014 · https://doi.org/10.1038/ng.3008

• Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

  Nature Biotechnology · 2014 · 10.1038/nbt.2906

• Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

  GigaScience · 2013 · https://doi.org/10.1186/2047-217x-2-10

• The Capsella rubella genome and the genomic consequences of rapid mating system evolution

  Nature Genetics · 2013 · https://doi.org/10.1038/ng.2669

• Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

  Nature · 2012 · https://doi.org/10.1038/nature11798

• Phytozome: a comparative platform for green plant genomics

  Nucleic Acids Research · 2011 · https://doi.org/10.1093/nar/gkr944

• Assemblathon 1: A competitive assessment of de novo short read assembly methods

  Genome Research · 2011 · https://doi.org/10.1101/gr.126599.111

• Genome sequence of the palaeopolyploid soybean

  Nature · 2010 · https://doi.org/10.1038/nature08670

• The dynamic genome of Hydra

  Nature · 2010 · https://doi.org/10.1038/nature08830

• The Genome of the Western Clawed Frog Xenopus tropicalis

  Science · 2010 · https://doi.org/10.1126/science.1183670

• The Sorghum bicolor genome and the diversification of grasses

  Nature · 2009 · https://doi.org/10.1038/nature07723

• Rapid whole-genome mutational profiling using next-generation sequencing technologies

  Genome Research · 2008 · https://doi.org/10.1101/gr.077776.108

• The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

  Nature · 2008 · 10.1038/nature06617

• The amphioxus genome and the evolution of the chordate karyotype

  Nature · 2008 · https://doi.org/10.1038/nature06967

• Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

  Nature Biotechnology · 2008 · https://doi.org/10.1038/nbt1403

• The amphioxus genome illuminates vertebrate origins and cephalochordate biology

  Genome Research · 2008 · https://doi.org/10.1101/gr.073676.107

• Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

  Science · 2007 · https://doi.org/10.1126/science.1139158

• The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

  Proceedings of the National Academy of Sciences · 2007 · https://doi.org/10.1073/pnas.0611046104

• The Genome of the Diatom Thalassiosira Pseudonana : Ecology, Evolution, and Metabolism

  Science · 2004 · https://doi.org/10.1126/science.1101156

• Community structure and metabolism through reconstruction of microbial genomes from the environment

  Nature · 2004 · https://doi.org/10.1038/nature02340

• The DNA sequence and biology of human chromosome 19

  Nature · 2004 · https://doi.org/10.1038/nature02399

• Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

  Science · 2002 · https://doi.org/10.1126/science.1072104

• Human Chromosome 19 and Related Regions in Mouse: Conservative and Lineage-Specific Evolution

  Science · 2001 · https://doi.org/10.1126/science.1060310

Current projects

No projects listed.