Songnian Hu

Research interests

Publications

• Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics

  Nature Genetics · 2022 · 10.1038/s41588-022-01172-2

• The genome evolution and domestication of tropical fruit mango

  Genome biology · 2020 · 10.1186/s13059-020-01959-8

• Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees

  Nucleic Acids Research · 2019 · https://doi.org/10.1093/nar/gkz357

• Analysis of gut microbiota diversity and auxiliary diagnosis as a biomarker in patients with schizophrenia: A cross-sectional study

  Schizophrenia Research · 2018 · 10.1016/j.schres.2018.01.002

• Oral Microbiota Community Dynamics Associated With Oral Squamous Cell Carcinoma Staging

  Frontiers in Microbiology · 2018 · 10.3389/fmicb.2018.00862

• Genetic Alterations in Esophageal Tissues From Squamous Dysplasia to Carcinoma

  Gastroenterology · 2017 · 10.1053/j.gastro.2017.03.033

• The rubber tree genome reveals new insights into rubber production and species adaptation

  Nature Plants · 2016 · 10.1038/nplants.2016.73

• Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees

  Nucleic Acids Research · 2016 · 10.1093/nar/gkw370

• Long Non-Coding RNAs and their Biological Roles in Plants

  Genomics Proteomics & Bioinformatics · 2015 · 10.1016/j.gpb.2015.02.003

• Full‐length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues of S alvia miltiorrhiza and tanshinone biosynthesis

  The Plant Journal · 2015 · 10.1111/tpj.12865

• Metatranscriptomic Analyses of Plant Cell Wall Polysaccharide Degradation by Microorganisms in the Cow Rumen

  Applied and Environmental Microbiology · 2014 · 10.1128/aem.03682-14

• Cassava genome from a wild ancestor to cultivated varieties

  Nature Communications · 2014 · 10.1038/ncomms6110

• Genome sequence of the date palm Phoenix dactylifera L

  Nature Communications · 2013 · 10.1038/ncomms3274

• The genomes of four tapeworm species reveal adaptations to parasitism

  Nature · 2013 · 10.1038/nature12031

• EvolView, an online tool for visualizing, annotating and managing phylogenetic trees

  Nucleic Acids Research · 2012 · 10.1093/nar/gks576

• Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa)

  New Phytologist · 2012 · 10.1111/j.1469-8137.2012.04154.x

• A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing

  Genomics · 2010 · 10.1016/j.ygeno.2010.07.010

• A Brief Review on the Mechanisms of miRNA Regulation

  Genomics Proteomics & Bioinformatics · 2009 · https://doi.org/10.1016/s1672-0229(08)60044-3

• On the nature of human housekeeping genes

  Trends in Genetics · 2008 · 10.1016/j.tig.2008.08.004

• Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing

  BMC Genomics · 2005 · 10.1186/1471-2164-6-70

• The Genomes of Oryza sativa: A History of Duplications

  PLoS Biology · 2005 · https://doi.org/10.1371/journal.pbio.0030038

• A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

  Nature · 2004 · 10.1038/nature03156

• A Complete Sequence of the T. tengcongensis Genome

  Genome Research · 2002 · 10.1101/gr.219302

• A Draft Sequence of the Rice Genome ( Oryza sativa L. ssp. indica )

  Science · 2002 · https://doi.org/10.1126/science.1068037

• A draft sequence of the rice genome (Oryza sativa L. ssp. indica) : The rice genome

  Science · 2002

Current projects

No projects listed.