Wonpil Im

Research interests

Publications

• Improving Protein-Ligand Docking Results with High-Throughput Molecular Dynamics Simulations

  Journal of Chemical Information and Modeling · 2020 · 10.1021/acs.jcim.0c00057

• Developing a Fully Glycosylated Full-Length SARS-CoV-2 Spike Protein Model in a Viral Membrane

  The Journal of Physical Chemistry B · 2020 · 10.1021/acs.jpcb.0c04553

• CHARMM-GUI supports the Amber force fields

  The Journal of Chemical Physics · 2020 · 10.1063/5.0012280

• CHARMM-GUIGlycan Modelerfor modeling and simulation of carbohydrates and glycoconjugates

  Glycobiology · 2019 · 10.1093/glycob/cwz003

• CHARMM-GUI Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans

  Journal of Chemical Theory and Computation · 2018 · 10.1021/acs.jctc.8b01066

• CHARMM-GUI ligand reader and modeler for CHARMM force field generation of small molecules

  Journal of Computational Chemistry · 2017 · 10.1002/jcc.24829

• CHARMM‐GUI 10 years for biomolecular modeling and simulation

  Journal of Computational Chemistry · 2016 · 10.1002/jcc.24660

• CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field

  Journal of Chemical Theory and Computation · 2015 · https://doi.org/10.1021/acs.jctc.5b00935

• CHARMM-GUI Martini Maker for Coarse-Grained Simulations with the Martini Force Field

  Journal of Chemical Theory and Computation · 2015 · https://doi.org/10.1021/acs.jctc.5b00513

• Effects of N-glycosylation on protein conformation and dynamics: Protein Data Bank analysis and molecular dynamics simulation study

  Scientific Reports · 2015 · 10.1038/srep08926

• CHARMM-GUI Membrane Builder toward realistic biological membrane simulations

  Journal of Computational Chemistry · 2014 · https://doi.org/10.1002/jcc.23702

• CHARMM-GUI PDB Manipulator for Advanced Modeling and Simulations of Proteins Containing Nonstandard Residues

  Advances in protein chemistry and structural biology · 2014 · 10.1016/bs.apcsb.2014.06.002

• Glycan reader: Automated sugar identification and simulation preparation for carbohydrates and glycoproteins

  Journal of Computational Chemistry · 2011 · 10.1002/jcc.21886

• CHARMM-GUI Membrane Builder for Mixed Bilayers and Its Application to Yeast Membranes

  Biophysical Journal · 2009 · https://doi.org/10.1016/j.bpj.2009.04.013

• CHARMM: The biomolecular simulation program

  Journal of Computational Chemistry · 2009 · https://doi.org/10.1002/jcc.21287

• PBEQ-Solver for online visualization of electrostatic potential of biomolecules

  Nucleic Acids Research · 2008 · 10.1093/nar/gkn314

• CHARMM‐GUI: A web‐based graphical user interface for CHARMM

  Journal of Computational Chemistry · 2008 · 10.1002/jcc.20945

• Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations

  PLoS ONE · 2007 · 10.1371/journal.pone.0000880

• Balancing Solvation and Intramolecular Interactions: Toward a Consistent Generalized Born Force Field

  Journal of the American Chemical Society · 2006 · 10.1021/ja057216r

• Theoretical and computational models of biological ion channels

  Quarterly Reviews of Biophysics · 2004 · 10.1017/s0033583504003968

• Generalized born model with a simple smoothing function

  Journal of Computational Chemistry · 2003 · 10.1002/jcc.10321

• An Implicit Membrane Generalized Born Theory for the Study of Structure, Stability, and Interactions of Membrane Proteins

  Biophysical Journal · 2003 · 10.1016/s0006-3495(03)74712-2

• Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures

  Journal of Computational Chemistry · 2003 · 10.1002/jcc.10378

• Ion Permeation and Selectivity of OmpF Porin: A Theoretical Study Based on Molecular Dynamics, Brownian Dynamics, and Continuum Electrodiffusion Theory

  Journal of Molecular Biology · 2002 · 10.1016/s0022-2836(02)00778-7

• Continuum solvation model: Computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equation

  Computer Physics Communications · 1998 · 10.1016/s0010-4655(98)00016-2

Current projects

No projects listed.