Ge Gao

Research interests

Publications

• Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2025

  Nucleic Acids Research · 2024 · https://doi.org/10.1093/nar/gkae978

• Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2024

  Nucleic Acids Research · 2023 · https://doi.org/10.1093/nar/gkad1078

• A lncRNA fine-tunes salicylic acid biosynthesis to balance plant immunity and growth

  Cell Host & Microbe · 2022 · https://doi.org/10.1016/j.chom.2022.07.001

• Multi-omics single-cell data integration and regulatory inference with graph-linked embedding

  Nature Biotechnology · 2022 · https://doi.org/10.1038/s41587-022-01284-4

• Searching large-scale scRNA-seq databases via unbiased cell embedding with Cell BLAST

  Nature Communications · 2020 · https://doi.org/10.1038/s41467-020-17281-7

• Receptor-Mediated ER Export of Lipoproteins Controls Lipid Homeostasis in Mice and Humans

  Cell Metabolism · 2020 · https://doi.org/10.1016/j.cmet.2020.10.020

• PlantRegMap: charting functional regulatory maps in plants

  Nucleic Acids Research · 2019 · https://doi.org/10.1093/nar/gkz1020

• SCALE method for single-cell ATAC-seq analysis via latent feature extraction

  Nature Communications · 2019 · https://doi.org/10.1038/s41467-019-12630-7

• An expanded landscape of human long noncoding RNA

  Nucleic Acids Research · 2019 · https://doi.org/10.1093/nar/gkz621

• GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes

  Genome Research · 2019 · https://doi.org/10.1101/gr.238733.118

• An ancestral NB-LRR with duplicated 3′UTRs confers stripe rust resistance in wheat and barley

  Nature Communications · 2019 · https://doi.org/10.1038/s41467-019-11872-9

• CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

  Nucleic Acids Research · 2017 · https://doi.org/10.1093/nar/gkx428

• GEPIA: a web server for cancer and normal gene expression profiling and interactive analyses

  Nucleic Acids Research · 2017 · https://doi.org/10.1093/nar/gkx247

• PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

  Nucleic Acids Research · 2016 · https://doi.org/10.1093/nar/gkw982

• AnArabidopsisTranscriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors

  Molecular Biology and Evolution · 2015 · https://doi.org/10.1093/molbev/msv058

• Interactome analysis identifies a new paralogue of XRCC4 in non-homologous end joining DNA repair pathway

  Nature Communications · 2015 · https://doi.org/10.1038/ncomms7233

• CasOT: a genome-wide Cas9/gRNA off-target searching tool

  Bioinformatics · 2014 · https://doi.org/10.1093/bioinformatics/btt764

• PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

  Nucleic Acids Research · 2013 · https://doi.org/10.1093/nar/gkt1016

• KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

  Nucleic Acids Research · 2011 · https://doi.org/10.1093/nar/gkr483

• Metabolic stress, reactive oxygen species, and arrhythmia

  Journal of Molecular and Cellular Cardiology · 2011 · https://doi.org/10.1016/j.yjmcc.2011.09.018

• Aspirin Plus Clopidogrel Therapy Increases Early Venous Graft Patency After Coronary Artery Bypass Surgery

  Journal of the American College of Cardiology · 2010 · https://doi.org/10.1016/j.jacc.2010.03.104

• PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

  Nucleic Acids Research · 2010 · https://doi.org/10.1093/nar/gkq1141

• CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine

  Nucleic Acids Research · 2007 · https://doi.org/10.1093/nar/gkm391

• PlantTFDB: a comprehensive plant transcription factor database

  Nucleic Acids Research · 2007 · https://doi.org/10.1093/nar/gkm841

• DRTF: a database of rice transcription factors

  Bioinformatics · 2006 · https://doi.org/10.1093/bioinformatics/btl107

Current projects

No projects listed.