Hiroyuki Ogata

Research interests

Publications

• Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

  Science · 2022 · 10.1126/science.abm5847

• Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

  Communications Biology · 2021 · 10.1038/s42003-021-02112-2

• KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold

  Bioinformatics · 2019 · https://doi.org/10.1093/bioinformatics/btz859

• Marine DNA Viral Macro- and Microdiversity from Pole to Pole

  Cell · 2019 · https://doi.org/10.1016/j.cell.2019.03.040

• Minimum Information about an Uncultivated Virus Genome (MIUViG)

  Nature Biotechnology · 2018 · https://doi.org/10.1038/nbt.4306

• ViPTree: the viral proteomic tree server

  Bioinformatics · 2017 · https://doi.org/10.1093/bioinformatics/btx157

• Linking Virus Genomes with Host Taxonomy

  Viruses · 2016 · https://doi.org/10.3390/v8030066

• Plankton networks driving carbon export in the oligotrophic ocean

  Nature · 2016 · 10.1038/nature16942

• Marine protist diversity in E uropean coastal waters and sediments as revealed by high‐throughput sequencing

  Environmental Microbiology · 2015 · 10.1111/1462-2920.12955

• Eukaryotic plankton diversity in the sunlit ocean

  Science · 2015 · https://doi.org/10.1126/science.1261605

• Patterns and ecological drivers of ocean viral communities

  Science · 2015 · 10.1126/science.1261498

• Determinants of community structure in the global plankton interactome

  Science · 2015 · https://doi.org/10.1126/science.1262073

• Patterns of Rare and Abundant Marine Microbial Eukaryotes

  Current Biology · 2014 · 10.1016/j.cub.2014.02.050

• Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

  The ISME Journal · 2013 · 10.1038/ismej.2013.59

• Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

  Environmental Microbiology · 2013 · 10.1111/1462-2920.12250

• Pan genome of the phytoplankton Emiliania underpins its global distribution

  Nature · 2013 · 10.1038/nature12221

• A Holistic Approach to Marine Eco-Systems Biology

  PLoS Biology · 2011 · 10.1371/journal.pbio.1001177

• Genome Sequence of Rickettsia bellii Illuminates the Role of Amoebae in Gene Exchanges between Intracellular Pathogens

  PLoS Genetics · 2006 · 10.1371/journal.pgen.0020076

• Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii

  PLoS Genetics · 2006 · 10.1371/journal.pgen.0020007

• The Genome Sequence of Rickettsia felis Identifies the First Putative Conjugative Plasmid in an Obligate Intracellular Parasite

  PLoS Biology · 2005 · 10.1371/journal.pbio.0030248

• The 1.2-Megabase Genome Sequence of Mimivirus

  Science · 2004 · https://doi.org/10.1126/science.1101485

• Mechanisms of Evolution in Rickettsia conorii and R. prowazekii

  Science · 2001 · 10.1126/science.1061471

• KEGG: Kyoto Encyclopedia of Genes and Genomes

  Nucleic Acids Research · 1999 · https://doi.org/10.1093/nar/27.1.29

• AAindex: Amino Acid Index Database

  Nucleic Acids Research · 1999 · 10.1093/nar/27.1.368

• Computation with the KEGG pathway database

  Biosystems · 1998 · 10.1016/s0303-2647(98)00017-3

Current projects

No projects listed.