Juan David Ramírez

Research interests

Publications

• Sequential intrahost evolution and onward transmission of SARS-CoV-2 variants

  Nature Communications · 2023 · 10.1038/s41467-023-38867-x

• Phylogenomic analysis of the monkeypox virus (MPXV) 2022 outbreak: Emergence of a novel viral lineage?

  Travel Medicine and Infectious Disease · 2022 · 10.1016/j.tmaid.2022.102402

• Human monkeypox disease (MPX)

  Infezioni in Medicina · 2022 · 10.53854/liim-3003-6

• Aedes aegypti and Ae. albopictus microbiome/virome: new strategies for controlling arboviral transmission?

  Parasites & Vectors · 2022 · 10.1186/s13071-022-05401-9

• The never-ending global emergence of viral zoonoses after COVID-19? The rising concern of monkeypox in Europe, North America and beyond

  Travel Medicine and Infectious Disease · 2022 · 10.1016/j.tmaid.2022.102362

• Association between physical activity and changes in intestinal microbiota composition: A systematic review

  PLoS ONE · 2021 · 10.1371/journal.pone.0247039

• Identification of Multiple Blastocystis Subtypes in Domestic Animals From Colombia Using Amplicon-Based Next Generation Sequencing

  Frontiers in Veterinary Science · 2021 · 10.3389/fvets.2021.732129

• A summary of Blastocystis subtypes in North and South America

  Parasites & Vectors · 2019 · 10.1186/s13071-019-3641-2

• Venezuela's humanitarian crisis, resurgence of vector-borne diseases, and implications for spillover in the region

  The Lancet Infectious Diseases · 2019 · https://doi.org/10.1016/s1473-3099(18)30757-6

• Resurgence of Vaccine-Preventable Diseases in Venezuela as a Regional Public Health Threat in the Americas

  Emerging infectious diseases · 2019 · 10.3201/eid2504.181305

• Molecular Epidemiology of Giardia, Blastocystis and Cryptosporidium among Indigenous Children from the Colombian Amazon Basin

  Frontiers in Microbiology · 2017 · 10.3389/fmicb.2017.00248

• Geographic distribution of human Blastocystis subtypes in South America

  Infection Genetics and Evolution · 2016 · https://doi.org/10.1016/j.meegid.2016.03.017

• Host-Protozoan Interactions Protect from Mucosal Infections through Activation of the Inflammasome

  Cell · 2016 · https://doi.org/10.1016/j.cell.2016.08.076

• Taxonomy, diversity, temporal and geographical distribution of Cutaneous Leishmaniasis in Colombia: A retrospective study

  Scientific Reports · 2016 · 10.1038/srep28266

• Analytical Validation of Quantitative Real-Time PCR Methods for Quantification of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients

  Journal of Molecular Diagnostics · 2015 · 10.1016/j.jmoldx.2015.04.010

• Identification of Six New World Leishmania species through the implementation of a High-Resolution Melting (HRM) genotyping assay

  Parasites & Vectors · 2014 · 10.1186/s13071-014-0501-y

• Blastocystis subtypes detected in humans and animals from Colombia

  Infection Genetics and Evolution · 2013 · https://doi.org/10.1016/j.meegid.2013.07.020

• Molecular Epidemiology of Human Oral Chagas Disease Outbreaks in Colombia

  PLoS neglected tropical diseases · 2013 · 10.1371/journal.pntd.0002041

• Trypanosome species in neo-tropical bats: Biological, evolutionary and epidemiological implications

  Infection Genetics and Evolution · 2013 · https://doi.org/10.1016/j.meegid.2013.06.022

• Multiple Mitochondrial Introgression Events and Heteroplasmy in Trypanosoma cruzi Revealed by Maxicircle MLST and Next Generation Sequencing

  PLoS neglected tropical diseases · 2012 · 10.1371/journal.pntd.0001584

• Contemporary cryptic sexuality in Trypanosoma cruzi

  Molecular Ecology · 2012 · https://doi.org/10.1111/j.1365-294x.2012.05699.x

• Towards the establishment of a consensus real-time qPCR to monitor Trypanosoma cruzi parasitemia in patients with chronic Chagas disease cardiomyopathy: A substudy from the BENEFIT trial

  Acta Tropica · 2012 · 10.1016/j.actatropica.2012.08.020

• International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients

  PLoS neglected tropical diseases · 2011 · https://doi.org/10.1371/journal.pntd.0000931

• Chagas Cardiomyopathy Manifestations and Trypanosoma cruzi Genotypes Circulating in Chronic Chagasic Patients

  PLoS neglected tropical diseases · 2010 · 10.1371/journal.pntd.0000899

• Evaluation of Adult Chronic Chagas' Heart Disease Diagnosis by Molecular and Serological Methods

  Journal of Clinical Microbiology · 2009 · https://doi.org/10.1128/jcm.01601-09

Current projects

No projects listed.