Joakim Lundeberg

Research interests

Publications

• An integrated cell atlas of the lung in health and disease

  Nature Medicine · 2023 · https://doi.org/10.1038/s41591-023-02327-2

• Spatially resolved clonal copy number alterations in benign and malignant tissue

  Nature · 2022 · https://doi.org/10.1038/s41586-022-05023-2

• A single-cell and spatially resolved atlas of human breast cancers

  Nature Genetics · 2021 · https://doi.org/10.1038/s41588-021-00911-1

• Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions

  Nature Communications · 2021 · https://doi.org/10.1038/s41467-021-26271-2

• Integrating spatial gene expression and breast tumour morphology via deep learning

  Nature Biomedical Engineering · 2020 · https://doi.org/10.1038/s41551-020-0578-x

• SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues

  Cell · 2020 · https://doi.org/10.1016/j.cell.2020.04.035

• Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19

  Immunity · 2020 · https://doi.org/10.1016/j.immuni.2020.11.017

• Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease

  Cell · 2020 · https://doi.org/10.1016/j.cell.2020.06.038

• High-definition spatial transcriptomics for in situ tissue profiling

  Nature Methods · 2019 · https://doi.org/10.1038/s41592-019-0548-y

• SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population

  European Journal of Human Genetics · 2017 · https://doi.org/10.1038/ejhg.2017.130

• Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

  Science · 2016 · https://doi.org/10.1126/science.aaf2403

• The Norway spruce genome sequence and conifer genome evolution

  Nature · 2013 · https://doi.org/10.1038/nature12211

• A hypoxic niche regulates glioblastoma stem cells through hypoxia inducible factor 2α

  Brain · 2010 · https://doi.org/10.1093/brain/awq042

• Defining the transcriptome and proteome in three functionally different human cell lines

  Molecular Systems Biology · 2010 · https://doi.org/10.1038/msb.2010.106

• A Human Protein Atlas for Normal and Cancer Tissues Based on Antibody Proteomics

  Molecular & Cellular Proteomics · 2005 · https://doi.org/10.1074/mcp.m500279-mcp200

• Versatile Gene-Specific Sequence Tags forArabidopsisFunctional Genomics: Transcript Profiling and Reverse Genetics Applications

  Genome Research · 2004 · https://doi.org/10.1101/gr.2544504

• Genetic Evidence for an East Asian Origin of Domestic Dogs

  Science · 2002 · https://doi.org/10.1126/science.1073906

• Multiple and Ancient Origins of the Domestic Dog

  Science · 1997 · https://doi.org/10.1126/science.276.5319.1687

Current projects

No projects listed.