Augustin Luna

Research interests

Publications

• scPerturb: harmonized single-cell perturbation data

  Nature Methods · 2024 · 10.1038/s41592-023-02144-y

• CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics

  Nucleic Acids Research · 2020 · 10.1093/nar/gkaa968

• Pathway Commons 2019 Update: integration, analysis and exploration of pathway data

  Nucleic Acids Research · 2019 · 10.1093/nar/gkz946

• Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

  Cell Systems · 2018 · https://doi.org/10.1016/j.cels.2018.03.002

• Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer

  Cell · 2018 · https://doi.org/10.1016/j.cell.2018.03.022

• Oncogenic Signaling Pathways in The Cancer Genome Atlas

  Cell · 2018 · 10.1016/j.cell.2018.03.035

• Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation

  Cell · 2018 · 10.1016/j.cell.2018.03.034

• Genomic and Functional Approaches to Understanding Cancer Aneuploidy

  Cancer Cell · 2018 · 10.1016/j.ccell.2018.03.007

• Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer

  Cell Reports · 2018 · 10.1016/j.celrep.2018.10.001

• lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer

  Cancer Cell · 2018 · 10.1016/j.ccell.2018.03.006

• Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types

  Cell Reports · 2018 · 10.1016/j.celrep.2018.01.088

• An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

  Cell · 2018 · https://doi.org/10.1016/j.cell.2018.02.052

• Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

  Cancer Cell · 2018 · https://doi.org/10.1016/j.ccell.2018.07.001

• Driver Fusions and Their Implications in the Development and Treatment of Human Cancers

  Cell Reports · 2018 · https://doi.org/10.1016/j.celrep.2018.03.050

• Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

  Cell Reports · 2018 · 10.1016/j.celrep.2018.03.064

• Systematic Analysis of Splice-Site-Creating Mutations in Cancer

  Cell Reports · 2018 · 10.1016/j.celrep.2018.03.052

• Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

  Cell Reports · 2018 · 10.1016/j.celrep.2018.03.046

• A Landscape of Metabolic Variation across Tumor Types

  Cell Systems · 2018 · 10.1016/j.cels.2017.12.014

• Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

  Cell Systems · 2018 · 10.1016/j.cels.2018.03.003

• Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers

  Cell Reports · 2018 · 10.1016/j.celrep.2018.03.077

• A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples

  Cell · 2018 · 10.1016/j.cell.2018.03.027

• Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures

  Genome biology · 2016 · 10.1186/s13059-016-1092-z

• An Integrated Metabolic Atlas of Clear Cell Renal Cell Carcinoma

  Cancer Cell · 2016 · 10.1016/j.ccell.2015.12.004

• The BioPAX community standard for pathway data sharing

  Nature Biotechnology · 2010 · 10.1038/nbt.1666

• The Systems Biology Graphical Notation

  Nature Biotechnology · 2009 · 10.1038/nbt.1558

Current projects

No projects listed.