Jongsik Chun

Research interests

Publications

• EzBioCloud: a genome-driven database and platform for microbiome identification and discovery

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2024 · https://doi.org/10.1099/ijsem.0.006421

• UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis

  The Journal of Microbiology · 2021 · https://doi.org/10.1007/s12275-021-1231-4

• Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity

  The Journal of Microbiology · 2021 · https://doi.org/10.1007/s12275-021-1154-0

• UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction

  The Journal of Microbiology · 2018 · https://doi.org/10.1007/s12275-018-8014-6

• Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2018 · https://doi.org/10.1099/ijsem.0.002516

• A large-scale evaluation of algorithms to calculate average nucleotide identity

  Antonie van Leeuwenhoek · 2017 · https://doi.org/10.1007/s10482-017-0844-4

• ContEst16S: an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2017 · https://doi.org/10.1099/ijsem.0.001872

• Characterization of microbiome in bronchoalveolar lavage fluid of patients with lung cancer comparing with benign mass like lesions

  Lung Cancer · 2016 · https://doi.org/10.1016/j.lungcan.2016.10.016

• Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2016 · https://doi.org/10.1099/ijsem.0.001755

• OrthoANI: An improved algorithm and software for calculating average nucleotide identity

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2015 · https://doi.org/10.1099/ijsem.0.000760

• Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2014 · https://doi.org/10.1099/ijs.0.054171-0

• Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2014 · https://doi.org/10.1099/ijs.0.059774-0

• Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains

  PLoS Biology · 2014 · https://doi.org/10.1371/journal.pbio.1001920

• Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too

  Microbial Ecology · 2012 · https://doi.org/10.1007/s00248-012-0028-8

• Evidence for several waves of global transmission in the seventh cholera pandemic

  Nature · 2011 · https://doi.org/10.1038/nature10392

• Phylogenetic study of the species within the family Streptomycetaceae

  Antonie van Leeuwenhoek · 2011 · https://doi.org/10.1007/s10482-011-9656-0

• Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2011 · https://doi.org/10.1099/ijs.0.038075-0

• Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae

  Proceedings of the National Academy of Sciences · 2009 · https://doi.org/10.1073/pnas.0907787106

• EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2007 · https://doi.org/10.1099/ijs.0.64915-0

• Bacterial community structure in kimchi, a Korean fermented vegetable food, as revealed by 16S rRNA gene analysis

  International Journal of Food Microbiology · 2005 · https://doi.org/10.1016/j.ijfoodmicro.2004.11.030

• A novel electrochemically active and Fe(III)-reducing bacterium phylogenetically related toAeromonas hydrophila, isolated from a microbial fuel cell

  FEMS Microbiology Letters · 2003 · https://doi.org/10.1016/s0378-1097(03)00354-9

• Genotypes Associated with Virulence in Environmental Isolates of Vibrio cholerae

  Applied and Environmental Microbiology · 2001 · https://doi.org/10.1128/aem.67.6.2421-2429.2001

• Analysis of 16S-23S rRNA Intergenic Spacer Regions of Vibrio cholerae and Vibrio mimicus

  Applied and Environmental Microbiology · 1999 · https://doi.org/10.1128/aem.65.5.2202-2208.1999

• A Phylogenetic Analysis of the Genus Nocardia with 16S rRNA Gene Sequences

  International Journal of Systematic Bacteriology · 1995 · https://doi.org/10.1099/00207713-45-2-240

Current projects

No projects listed.