Arndt von Haeseler

Research interests

Publications

• IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

  Molecular Biology and Evolution · 2020 · https://doi.org/10.1093/molbev/msaa015

• Corrigendum to: IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

  Molecular Biology and Evolution · 2020 · https://doi.org/10.1093/molbev/msaa131

• IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era

  bioRxiv (Cold Spring Harbor Laboratory) · 2019 · https://doi.org/10.1101/849372

• Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes

  Nature Communications · 2018 · https://doi.org/10.1038/s41467-018-03861-1

• Accurate detection of complex structural variations using single-molecule sequencing

  Nature Methods · 2018 · 10.1038/s41592-018-0001-7

• SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis

  Science · 2018 · https://doi.org/10.1126/science.aao2793

• ModelFinder: fast model selection for accurate phylogenetic estimates

  Nature Methods · 2017 · https://doi.org/10.1038/nmeth.4285

• UFBoot2: Improving the Ultrafast Bootstrap Approximation

  Molecular Biology and Evolution · 2017 · https://doi.org/10.1093/molbev/msx281

• Thiol-linked alkylation of RNA to assess expression dynamics

  Nature Methods · 2017 · 10.1038/nmeth.4435

• Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

  Systematic Biology · 2016 · 10.1093/sysbio/syw037

• W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

  Nucleic Acids Research · 2016 · https://doi.org/10.1093/nar/gkw256

• Next-generation sequencing diagnostics of bacteremia in septic patients

  Genome Medicine · 2016 · https://doi.org/10.1186/s13073-016-0326-8

• The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima

  PLoS Biology · 2014 · https://doi.org/10.1371/journal.pbio.1002005

• IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

  Molecular Biology and Evolution · 2014 · https://doi.org/10.1093/molbev/msu300

• Updating benchtop sequencing performance comparison

  Nature Biotechnology · 2013 · https://doi.org/10.1038/nbt.2522

• NextGenMap: fast and accurate read mapping in highly polymorphic genomes

  Bioinformatics · 2013 · https://doi.org/10.1093/bioinformatics/btt468

• The performance of phylogenetic algorithms in estimating haplotype genealogies with migration

  Molecular Ecology · 2011 · https://doi.org/10.1111/j.1365-294x.2011.05066.x

• A Phylogenomic Approach to Resolve the Arthropod Tree of Life

  Molecular Biology and Evolution · 2010 · https://doi.org/10.1093/molbev/msq130

• Genome-Wide RNAi Screen Identifies Genes Involved in Intestinal Pathogenic Bacterial Infection

  Science · 2009 · https://doi.org/10.1126/science.1173164

• Unexpected complexity of the Wnt gene family in a sea anemone

  Nature Cell Biology · 2005 · https://doi.org/10.1038/nature03158

• RETRACTED ARTICLE: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

  BMC Evolutionary Biology · 2004 · 10.1186/1471-2148-4-18

• TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

  Bioinformatics · 2002 · 10.1093/bioinformatics/18.3.502

• A view of Neandertal genetic diversity

  Nature Genetics · 2000 · https://doi.org/10.1038/79855

• Likelihood-mapping: A simple method to visualize phylogenetic content of a sequence alignment

  Proceedings of the National Academy of Sciences · 1997 · 10.1073/pnas.94.13.6815

• Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies

  Molecular Biology and Evolution · 1996 · 10.1093/oxfordjournals.molbev.a025664

• Comparative evolutionary analysis of rDNA ITS regions in Drosophila.

  Molecular Biology and Evolution · 1994 · https://doi.org/10.1093/oxfordjournals.molbev.a040131

• The marsupial mitochondrial genome and the evolution of placental mammals.

  Genetics · 1994 · https://doi.org/10.1093/genetics/137.1.243

Current projects

No projects listed.