Ruth E. Ley

Research interests

Publications

• Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

  Nature Biotechnology · 2019 · https://doi.org/10.1038/s41587-019-0209-9

• Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

  Nature Biotechnology · 2019 · https://doi.org/10.1038/s41587-019-0252-6

• QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

  Journal · 2018 · https://doi.org/10.7287/peerj.preprints.27295v1

• Enterotypes in the landscape of gut microbial community composition

  Nature Microbiology · 2017 · https://doi.org/10.1038/s41564-017-0072-8

• Genetic Determinants of the Gut Microbiome in UK Twins

  Cell Host & Microbe · 2016 · https://doi.org/10.1016/j.chom.2016.04.017

• Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

  Nature · 2015 · 10.1038/nature14232

• Human Genetics Shape the Gut Microbiome

  Cell · 2014 · 10.1016/j.cell.2014.09.053

• Diversity and heritability of the maize rhizosphere microbiome under field conditions

  Proceedings of the National Academy of Sciences · 2013 · 10.1073/pnas.1302837110

• Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy

  Cell · 2012 · 10.1016/j.cell.2012.07.008

• Defining the core Arabidopsis thaliana root microbiome

  Nature · 2012 · 10.1038/nature11237

• Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

  Nature Biotechnology · 2011 · 10.1038/nbt.1823

• Unravelling the effects of the environment and host genotype on the gut microbiome

  Nature Reviews Microbiology · 2011 · 10.1038/nrmicro2540

• The Antibacterial Lectin RegIIIγ Promotes the Spatial Segregation of Microbiota and Host in the Intestine

  Science · 2011 · 10.1126/science.1209791

• Metabolic Syndrome and Altered Gut Microbiota in Mice Lacking Toll-Like Receptor 5

  Science · 2010 · 10.1126/science.1179721

• QIIME allows analysis of high-throughput community sequencing data

  Nature Methods · 2010 · https://doi.org/10.1038/nmeth.f.303

• Succession of microbial consortia in the developing infant gut microbiome

  Proceedings of the National Academy of Sciences · 2010 · 10.1073/pnas.1000081107

• Human oral, gut, and plaque microbiota in patients with atherosclerosis

  Proceedings of the National Academy of Sciences · 2010 · 10.1073/pnas.1011383107

• A core gut microbiome in obese and lean twins

  Nature · 2008 · https://doi.org/10.1038/nature07540

• Evolution of Mammals and Their Gut Microbes

  Science · 2008 · 10.1126/science.1155725

• Innate immunity and intestinal microbiota in the development of Type 1 diabetes

  Nature · 2008 · 10.1038/nature07336

• Worlds within worlds: evolution of the vertebrate gut microbiota

  Nature Reviews Microbiology · 2008 · 10.1038/nrmicro1978

• The Human Microbiome Project

  Nature · 2007 · 10.1038/nature06244

• Human gut microbes associated with obesity

  Nature · 2006 · https://doi.org/10.1038/4441022a

• An obesity-associated gut microbiome with increased capacity for energy harvest

  Nature · 2006 · https://doi.org/10.1038/nature05414

• Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine

  Cell · 2006 · 10.1016/j.cell.2006.02.017

• Obesity alters gut microbial ecology

  Proceedings of the National Academy of Sciences · 2005 · 10.1073/pnas.0504978102

• Host-Bacterial Mutualism in the Human Intestine

  Science · 2005 · 10.1126/science.1104816

Current projects

No projects listed.