Steven J.M. Jones

Research interests

Publications

• Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution

  Nature Genetics · 2020 · https://doi.org/10.1038/s41588-019-0566-9

• The chromatin accessibility landscape of primary human cancers

  Science · 2018 · https://doi.org/10.1126/science.aav1898

• The whole-genome landscape of medulloblastoma subtypes

  Nature · 2017 · https://doi.org/10.1038/nature22973

• CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

  Nature Genetics · 2017 · https://doi.org/10.1038/ng.3774

• Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma

  Cancer Cell · 2017 · 10.1016/j.ccell.2017.07.003

• Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma

  Cancer Cell · 2017 · https://doi.org/10.1016/j.ccell.2017.07.007

• Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma

  Cell · 2017 · 10.1016/j.cell.2017.05.046

• Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma

  Cancer Cell · 2016 · 10.1016/j.ccell.2016.04.002

• The Atlantic salmon genome provides insights into rediploidization

  Nature · 2016 · 10.1038/nature17164

• Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer

  Cell · 2015 · 10.1016/j.cell.2015.09.033

• Integrative analysis of 111 reference human epigenomes

  Nature · 2015 · https://doi.org/10.1038/nature14248

• Metastasis is regulated via microRNA-200/ZEB1 axis control of tumour cell PD-L1 expression and intratumoral immunosuppression

  Nature Communications · 2014 · 10.1038/ncomms6241

• Comprehensive molecular characterization of gastric adenocarcinoma

  Nature · 2014 · https://doi.org/10.1038/nature13480

• Integrated Genomic Characterization of Papillary Thyroid Carcinoma

  Cell · 2014 · 10.1016/j.cell.2014.09.050

• The genetic landscape of high-risk neuroblastoma

  Nature Genetics · 2013 · 10.1038/ng.2529

• Mutational Analysis Reveals the Origin and Therapy-Driven Evolution of Recurrent Glioma

  Science · 2013 · 10.1126/science.1239947

• The clonal and mutational evolution spectrum of primary triple-negative breast cancers

  Nature · 2012 · 10.1038/nature10933

• Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak

  New England Journal of Medicine · 2011 · 10.1056/nejmoa1003176

• Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma

  Nature · 2011 · 10.1038/nature10351

• MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers

  Nature · 2011 · 10.1038/nature09754

• Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin

  Nature Genetics · 2010 · 10.1038/ng.518

• Tumor-Associated Macrophages and Survival in Classic Hodgkin's Lymphoma

  New England Journal of Medicine · 2010 · 10.1056/nejmoa0905680

• De novo assembly and analysis of RNA-seq data

  Nature Methods · 2010 · 10.1038/nmeth.1517

• Conserved role of intragenic DNA methylation in regulating alternative promoters

  Nature · 2010 · 10.1038/nature09165

• ARID1A Mutations in Endometriosis-Associated Ovarian Carcinomas

  New England Journal of Medicine · 2010 · 10.1056/nejmoa1008433

• Mutation of FOXL2 in Granulosa-Cell Tumors of the Ovary

  New England Journal of Medicine · 2009 · 10.1056/nejmoa0902542

• Circos: An information aesthetic for comparative genomics

  Genome Research · 2009 · https://doi.org/10.1101/gr.092759.109

• Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

  Nature · 2009 · 10.1038/nature08489

• ABySS: A parallel assembler for short read sequence data

  Genome Research · 2009 · https://doi.org/10.1101/gr.089532.108

• Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

  Nature Methods · 2007 · 10.1038/nmeth1068

• The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

  Science · 2006 · https://doi.org/10.1126/science.1128691

• Genome sequence of the Brown Norway rat yields insights into mammalian evolution

  Nature · 2004 · 10.1038/nature02426

• The Genome Sequence of the SARS-Associated Coronavirus

  Science · 2003 · 10.1126/science.1085953

• The Genome Sequence of the SARS-Associated Coronavirus

  Science · 2003 · 10.1126/science.1085953

• Comparative Genomics of the Eukaryotes

  Science · 2000 · 10.1126/science.287.5461.2204

Current projects

No projects listed.