Björn Usadel

Research interests

Publications

• MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis

  Molecular Plant · 2019 · 10.1016/j.molp.2019.01.003

• Tomato facultative parthenocarpy results from Sl AGAMOUS ‐ LIKE 6 loss of function

  Plant Biotechnology Journal · 2016 · 10.1111/pbi.12662

• Trimmomatic: a flexible trimmer for Illumina sequence data

  Bioinformatics · 2014 · https://doi.org/10.1093/bioinformatics/btu170

• The genome of the stress-tolerant wild tomato species Solanum pennellii

  Nature Genetics · 2014 · 10.1038/ng.3046

• Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

  Proceedings of the National Academy of Sciences · 2013 · 10.1073/pnas.1309606110

• M ercator: a fast and simple web server for genome scale functional annotation of plant sequence data

  Plant Cell & Environment · 2013 · 10.1111/pce.12231

• RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

  Nucleic Acids Research · 2012 · https://doi.org/10.1093/nar/gks540

• PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species

  The Plant Cell · 2011 · 10.1105/tpc.111.083667

• Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor ( nor, rin ) and Ethylene Receptor ( Nr ) Mutants Reveals Novel Regulatory Interactions

  PLANT PHYSIOLOGY · 2011 · 10.1104/pp.111.175463

• Quantitation in Mass-Spectrometry-Based Proteomics

  Annual Review of Plant Biology · 2010 · 10.1146/annurev-arplant-042809-112132

• Arabidopsis and primary photosynthetic metabolism – more than the icing on the cake

  The Plant Journal · 2010 · 10.1111/j.1365-313x.2010.04142.x

• Starch as a major integrator in the regulation of plant growth

  Proceedings of the National Academy of Sciences · 2009 · 10.1073/pnas.0903478106

• A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

  Plant Cell & Environment · 2009 · 10.1111/j.1365-3040.2009.01978.x

• Co‐expression tools for plant biology: opportunities for hypothesis generation and caveats

  Plant Cell & Environment · 2009 · 10.1111/j.1365-3040.2009.02040.x

• Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis

  The Plant Journal · 2008 · 10.1111/j.1365-313x.2008.03590.x

• Global Transcript Levels Respond to Small Changes of the Carbon Status during Progressive Exhaustion of Carbohydrates in Arabidopsis Rosettes

  PLANT PHYSIOLOGY · 2008 · 10.1104/pp.107.115592

• Barley Grain Maturation and Germination: Metabolic Pathway and Regulatory Network Commonalities and Differences Highlighted by New MapMan/PageMan Profiling Tools

  PLANT PHYSIOLOGY · 2008 · 10.1104/pp.107.111781

• Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon‐deprived Arabidopsis seedlings

  The Plant Journal · 2007 · 10.1111/j.1365-313x.2006.02979.x

• Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsisrosettes

  Genome biology · 2006 · 10.1186/gb-2006-7-8-r76

• Integrated Analysis of Metabolite and Transcript Levels Reveals the Metabolic Shifts That Underlie Tomato Fruit Development and Highlight Regulatory Aspects of Metabolic Network Behavior

  PLANT PHYSIOLOGY · 2006 · 10.1104/pp.106.088534

• Genome‐wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus

  Plant Cell & Environment · 2006 · 10.1111/j.1365-3040.2006.01608.x

• PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments

  BMC Bioinformatics · 2006 · 10.1186/1471-2105-7-535

• Sugars and Circadian Regulation Make Major Contributions to the Global Regulation of Diurnal Gene Expression in Arabidopsis

  The Plant Cell · 2005 · https://doi.org/10.1105/tpc.105.035261

• Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses

  PLANT PHYSIOLOGY · 2005 · https://doi.org/10.1104/pp.105.060459

• GMD@CSB.DB: the Golm Metabolome Database

  Computer applications in the biosciences · 2004 · https://doi.org/10.1093/bioinformatics/bti236

Current projects

No projects listed.