Ole Lund

Research interests

Publications

• ResFinder 4.0 for predictions of phenotypes from genotypes

  Journal of Antimicrobial Chemotherapy · 2020 · https://doi.org/10.1093/jac/dkaa345

• CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

  Genome biology · 2020 · https://doi.org/10.1186/s13059-020-02014-2

• Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries

  Nature Microbiology · 2018 · https://doi.org/10.1038/s41564-018-0192-9

• Insights from 20 years of bacterial genome sequencing

  Functional & Integrative Genomics · 2015 · https://doi.org/10.1007/s10142-015-0433-4

• Benchmarking of Methods for Genomic Taxonomy

  Journal of Clinical Microbiology · 2014 · https://doi.org/10.1128/jcm.02981-13

• Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

  Journal of Clinical Microbiology · 2014 · https://doi.org/10.1128/jcm.03617-13

• Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

  Nature Biotechnology · 2014 · https://doi.org/10.1038/nbt.2939

• In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

  Antimicrobial Agents and Chemotherapy · 2014 · https://doi.org/10.1128/aac.02412-14

• Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

  Journal of Clinical Microbiology · 2012 · https://doi.org/10.1128/jcm.06094-11

• Identification of acquired antimicrobial resistance genes

  Journal of Antimicrobial Chemotherapy · 2012 · https://doi.org/10.1093/jac/dks261

• An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia

  Science · 2011 · 10.1126/science.1211177

• Immune epitope database analysis resource (IEDB-AR)

  Nucleic Acids Research · 2008 · https://doi.org/10.1093/nar/gkn254

• Towards a consensus on datasets and evaluation metrics for developing B‐cell epitope prediction tools

  Journal of Molecular Recognition · 2007 · https://doi.org/10.1002/jmr.815

• A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules

  PLoS Computational Biology · 2006 · https://doi.org/10.1371/journal.pcbi.0020065

• The Immune Epitope Database and Analysis Resource: From Vision to Blueprint

  PLoS Biology · 2005 · https://doi.org/10.1371/journal.pbio.0030091

• Reliable prediction of T‐cell epitopes using neural networks with novel sequence representations

  Protein Science · 2003 · 10.1110/ps.0239403

• Prediction of O-glycosylation of mammalian proteins: specificity patterns of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase

  Biochemical Journal · 1995 · https://doi.org/10.1042/bj3080801

Current projects

No projects listed.