Simon Rasmussen

Research interests

Publications

• Critical Assessment of Metagenome Interpretation: the second round of challenges

  Nature Methods · 2022 · https://doi.org/10.1038/s41592-022-01431-4

• Improved metagenome binning and assembly using deep variational autoencoders

  Nature Biotechnology · 2021 · 10.1038/s41587-020-00777-4

• A reference map of potential determinants for the human serum metabolome

  Nature · 2020 · https://doi.org/10.1038/s41586-020-2896-2

• Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

  Nature Communications · 2019 · https://doi.org/10.1038/s41467-019-08853-3

• The population history of northeastern Siberia since the Pleistocene

  Nature · 2019 · https://doi.org/10.1038/s41586-019-1279-z

• Early human dispersals within the Americas

  Science · 2018 · https://doi.org/10.1126/science.aav2621

• The prehistoric peopling of Southeast Asia

  Science · 2018 · https://doi.org/10.1126/science.aat3628

• 137 ancient human genomes from across the Eurasian steppes

  Nature · 2018 · https://doi.org/10.1038/s41586-018-0094-2

• The first horse herders and the impact of early Bronze Age steppe expansions into Asia

  Science · 2018 · https://doi.org/10.1126/science.aar7711

• Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans

  Nature · 2018 · https://doi.org/10.1038/nature25173

• A genomic history of Aboriginal Australia

  Nature · 2016 · https://doi.org/10.1038/nature18299

• Population genomics of Bronze Age Eurasia

  Nature · 2015 · https://doi.org/10.1038/nature14507

• Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago

  Cell · 2015 · https://doi.org/10.1016/j.cell.2015.10.009

• Genomic evidence for the Pleistocene and recent population history of Native Americans

  Science · 2015 · https://doi.org/10.1126/science.aab3884

• Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

  Nature Biotechnology · 2014 · https://doi.org/10.1038/nbt.2939

• Benchmarking of Methods for Genomic Taxonomy

  Journal of Clinical Microbiology · 2014 · https://doi.org/10.1128/jcm.02981-13

• Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

  Nature · 2014 · https://doi.org/10.1038/nature12960

• The genome of a Late Pleistocene human from a Clovis burial site in western Montana

  Nature · 2014 · https://doi.org/10.1038/nature13025

• Richness of human gut microbiome correlates with metabolic markers

  Nature · 2013 · https://doi.org/10.1038/nature12506

• Transcriptome Responses to Combinations of Stresses in Arabidopsis

  PLANT PHYSIOLOGY · 2013 · https://doi.org/10.1104/pp.112.210773

• Metagenomic species profiling using universal phylogenetic marker genes

  Nature Methods · 2013 · https://doi.org/10.1038/nmeth.2693

• Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

  Nature · 2013 · https://doi.org/10.1038/nature12736

• Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

  Journal of Clinical Microbiology · 2012 · https://doi.org/10.1128/jcm.06094-11

• Identification of acquired antimicrobial resistance genes

  Journal of Antimicrobial Chemotherapy · 2012 · https://doi.org/10.1093/jac/dks261

• An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia

  Science · 2011 · 10.1126/science.1211177

• Double-Stranded RNA Is Produced by Positive-Strand RNA Viruses and DNA Viruses but Not in Detectable Amounts by Negative-Strand RNA Viruses

  Journal of Virology · 2006 · https://doi.org/10.1128/jvi.80.10.5059-5064.2006

Current projects

No projects listed.