Matthew Monroe

Research interests

Publications

• Proteogenomic and metabolomic characterization of human glioblastoma

  Cancer Cell · 2021 · https://doi.org/10.1016/j.ccell.2021.01.006

• Proteogenomic Characterization of Endometrial Carcinoma

  Cell · 2020 · https://doi.org/10.1016/j.cell.2020.01.026

• Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer

  Cell · 2020 · https://doi.org/10.1016/j.cell.2020.10.044

• SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes

  Analytical Chemistry · 2019 · 10.1021/acs.analchem.9b02808

• Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities

  Cell · 2019 · https://doi.org/10.1016/j.cell.2019.03.030

• Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry

  Nature Protocols · 2018 · https://doi.org/10.1038/s41596-018-0006-9

• MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

  Proceedings of the National Academy of Sciences · 2018 · 10.1073/pnas.1706928115

• Multi-platform ’Omics Analysis of Human Ebola Virus Disease Pathogenesis

  Cell Host & Microbe · 2017 · https://doi.org/10.1016/j.chom.2017.10.011

• Quantitative proteomics identifies altered O‐GlcNAcylation of structural, synaptic and memory‐associated proteins in Alzheimer's disease

  The Journal of Pathology · 2017 · 10.1002/path.4929

• Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer

  Cell · 2016 · https://doi.org/10.1016/j.cell.2016.05.069

• Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry

  The Analyst · 2016 · https://doi.org/10.1039/c5an02062j

• Tandem mass spectrometry identifies many mouse brain O -GlcNAcylated proteins including EGF domain-specific O -GlcNAc transferase targets

  Proceedings of the National Academy of Sciences · 2012 · 10.1073/pnas.1200425109

• Reversed‐phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells

  PROTEOMICS · 2011 · https://doi.org/10.1002/pmic.201000722

• DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

  Bioinformatics · 2008 · 10.1093/bioinformatics/btn063

• MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC–MS(/MS) features

  Computational Biology and Chemistry · 2008 · 10.1016/j.compbiolchem.2008.02.006

• VIPER: an advanced software package to support high-throughput LC-MS peptide identification

  Bioinformatics · 2007 · 10.1093/bioinformatics/btm281

• High Dynamic Range Characterization of the Trauma Patient Plasma Proteome

  Molecular & Cellular Proteomics · 2006 · 10.1074/mcp.m600068-mcp200

• Improved Peptide Elution Time Prediction for Reversed-Phase Liquid Chromatography-MS by Incorporating Peptide Sequence Information

  Analytical Chemistry · 2006 · 10.1021/ac060143p

• Robust Algorithm for Alignment of Liquid Chromatography−Mass Spectrometry Analyses in an Accurate Mass and Time Tag Data Analysis Pipeline

  Analytical Chemistry · 2006 · 10.1021/ac052197p

• Advances in proteomics data analysis and display using an accurate mass and time tag approach

  Mass Spectrometry Reviews · 2006 · 10.1002/mas.20071

• Human Plasma N -Glycoproteome Analysis by Immunoaffinity Subtraction, Hydrazide Chemistry, and Mass Spectrometry

  Journal of Proteome Research · 2005 · https://doi.org/10.1021/pr0502065

• Quantitative Proteome Analysis of Human Plasma following in Vivo Lipopolysaccharide Administration Using 16O/18O Labeling and the Accurate Mass and Time Tag Approach

  Molecular & Cellular Proteomics · 2005 · 10.1074/mcp.m500045-mcp200

• Probability-Based Evaluation of Peptide and Protein Identifications from Tandem Mass Spectrometry and SEQUEST Analysis: The Human Proteome

  Journal of Proteome Research · 2004 · https://doi.org/10.1021/pr0498638

• Integrative Analysis of the Mitochondrial Proteome in Yeast

  PLoS Biology · 2004 · 10.1371/journal.pbio.0020160

• Identification of Proteins in Human Cytomegalovirus (HCMV) Particles: the HCMV Proteome

  Journal of Virology · 2004 · https://doi.org/10.1128/jvi.78.20.10960-10966.2004

Current projects

No projects listed.