Samuel Purvine

Research interests

Publications

• Intracellular pathways for lignin catabolism in white-rot fungi

  Proceedings of the National Academy of Sciences · 2021 · 10.1073/pnas.2017381118

• Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440

  Proceedings of the National Academy of Sciences · 2020 · 10.1073/pnas.1921073117

• Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis

  BMC Genomics · 2019 · https://doi.org/10.1186/s12864-019-6358-x

• Multiomics resolution of molecular events during a day in the life of Chlamydomonas

  Proceedings of the National Academy of Sciences · 2019 · 10.1073/pnas.1815238116

• Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem

  Nature Microbiology · 2018 · 10.1038/s41564-018-0225-4

• Genome-centric view of carbon processing in thawing permafrost

  Nature · 2018 · 10.1038/s41586-018-0338-1

• MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

  Proceedings of the National Academy of Sciences · 2018 · 10.1073/pnas.1706928115

• High‐throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild isolates

  The Plant Journal · 2017 · 10.1111/tpj.13788

• A parts list for fungal cellulosomes revealed by comparative genomics

  Nature Microbiology · 2017 · https://doi.org/10.1038/nmicrobiol.2017.87

• New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11

  The ISME Journal · 2016 · 10.1038/ismej.2016.150

• Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes

  Science · 2016 · https://doi.org/10.1126/science.aad1431

• Tandem mass spectrometry identifies many mouse brain O -GlcNAcylated proteins including EGF domain-specific O -GlcNAc transferase targets

  Proceedings of the National Academy of Sciences · 2012 · 10.1073/pnas.1200425109

• Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

  The ISME Journal · 2012 · 10.1038/ismej.2012.10

• Omic data from evolved E. coli are consistent with computed optimal growth from genome‐scale models

  Molecular Systems Biology · 2010 · https://doi.org/10.1038/msb.2010.47

• Establishing the Proteome of Normal Human Cerebrospinal Fluid

  PLoS ONE · 2010 · 10.1371/journal.pone.0010980

• Proteogenomics: needs and roles to be filled by proteomics in genome annotation

  Briefings in Functional Genomics and Proteomics · 2008 · 10.1093/bfgp/eln010

• DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

  Bioinformatics · 2008 · 10.1093/bioinformatics/btn063

• High Dynamic Range Characterization of the Trauma Patient Plasma Proteome

  Molecular & Cellular Proteomics · 2006 · 10.1074/mcp.m600068-mcp200

• Evaluation of Multiprotein Immunoaffinity Subtraction for Plasma Proteomics and Candidate Biomarker Discovery Using Mass Spectrometry

  Molecular & Cellular Proteomics · 2006 · 10.1074/mcp.t600039-mcp200

• Proteomic Analysis of Salmonella enterica Serovar Typhimurium Isolated from RAW 264.7 Macrophages

  Journal of Biological Chemistry · 2006 · 10.1074/jbc.m604640200

• Shotgun collision‐induced dissociation of peptides using a time of flight mass analyzer

  PROTEOMICS · 2003 · 10.1002/pmic.200300362

• The study of macromolecular complexes by quantitative proteomics

  Nature Genetics · 2003 · 10.1038/ng1101

• Approaching complete peroxisome characterization by gas-phase fractionation

  Electrophoresis · 2002 · 10.1002/1522-2683(200209)23:18<3205::aid-elps3205>3.0.co;2-y

• Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis

  OMICS A Journal of Integrative Biology · 2002 · 10.1089/153623102760092805

• Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation

  Rapid Communications in Mass Spectrometry · 2001 · 10.1002/rcm.362

Current projects

No projects listed.