Jeremy Zucker

Research interests

Publications

• Perspectives for self-driving labs in synthetic biology

  Current Opinion in Biotechnology · 2023 · 10.1016/j.copbio.2022.102881

• COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

  Molecular Systems Biology · 2021 · https://doi.org/10.15252/msb.202110387

• Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass

  Biotechnology for Biofuels · 2021 · 10.1186/s13068-021-01950-w

• Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways

  Cell Systems · 2018 · 10.1016/j.cels.2018.10.014

• Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes

  mSystems · 2016 · 10.1128/msystems.00045-16

• Microbial Community Metabolic Modeling: A Community Data‐Driven Network Reconstruction

  Journal of Cellular Physiology · 2016 · 10.1002/jcp.25428

• Genome-Wide Characterization of Light-Regulated Genes inNeurospora crassa

  G3 Genes Genomes Genetics · 2014 · 10.1534/g3.114.012617

• Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM

  PLoS Computational Biology · 2013 · 10.1371/journal.pcbi.1003126

• Genomics of Loa loa, a Wolbachia-free filarial parasite of humans

  Nature Genetics · 2013 · 10.1038/ng.2585

• The Mycobacterium tuberculosis regulatory network and hypoxia

  Nature · 2013 · 10.1038/nature12337

• A framework for human microbiome research

  Nature · 2012 · https://doi.org/10.1038/nature11209

• Structure, function and diversity of the healthy human microbiome

  Nature · 2012 · https://doi.org/10.1038/nature11234

• Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E . gallinarum and E . casseliflavus

  mBio · 2012 · 10.1128/mbio.00318-11

• Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

  PLoS Computational Biology · 2012 · 10.1371/journal.pcbi.1002358

• Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis

  BMC Genomics · 2012 · 10.1186/1471-2164-13-120

• Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development

  PLoS Genetics · 2011 · 10.1371/journal.pgen.1002219

• Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis

  Institutional Repository University of Antioquia (University of Antioquia) · 2011 · 10.1371/journal.pgen.1002345

• Microbial community function and biomarker discovery in the human microbiome

  Genome biology · 2011 · 10.1186/gb-2011-12-s1-p47

• The BioPAX community standard for pathway data sharing

  Nature Biotechnology · 2010 · 10.1038/nbt.1666

• TB database 2010: Overview and update

  Tuberculosis · 2010 · 10.1016/j.tube.2010.03.010

• A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola

  BMC Systems Biology · 2009 · 10.1186/1752-0509-3-24

• Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production

  PLoS Computational Biology · 2009 · 10.1371/journal.pcbi.1000489

• Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus

  PLoS Genetics · 2007 · 10.1371/journal.pgen.0030231

Current projects

No projects listed.