Ljiljana Paša‐Tolić

Research interests

Publications

• An atlas of healthy and injured cell states and niches in the human kidney

  Nature · 2023 · https://doi.org/10.1038/s41586-023-05769-3

• Life and death in the soil microbiome: how ecological processes influence biogeochemistry

  Nature Reviews Microbiology · 2022 · https://doi.org/10.1038/s41579-022-00695-z

• High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip

  Nature Communications · 2021 · https://doi.org/10.1038/s41467-021-26514-2

• The Human Proteoform Project: Defining the human proteome

  Science Advances · 2021 · https://doi.org/10.1126/sciadv.abk0734

• Higher-order structural characterisation of native proteins and complexes by top-down mass spectrometry

  Chemical Science · 2020 · https://doi.org/10.1039/d0sc04392c

• An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics

  Molecular & Cellular Proteomics · 2020 · https://doi.org/10.1074/mcp.ra119.001857

• Best practices and benchmarks for intact protein analysis for top-down mass spectrometry

  Nature Methods · 2019 · https://doi.org/10.1038/s41592-019-0457-0

• Moving beyond the van Krevelen Diagram: A New Stoichiometric Approach for Compound Classification in Organisms

  Analytical Chemistry · 2018 · https://doi.org/10.1021/acs.analchem.8b00529

• Formularity: Software for Automated Formula Assignment of Natural and Other Organic Matter from Ultrahigh-Resolution Mass Spectra

  Analytical Chemistry · 2017 · https://doi.org/10.1021/acs.analchem.7b03318

• Informed-Proteomics: open-source software package for top-down proteomics

  Nature Methods · 2017 · https://doi.org/10.1038/nmeth.4388

• Advanced Solvent Based Methods for Molecular Characterization of Soil Organic Matter by High-Resolution Mass Spectrometry

  Analytical Chemistry · 2015 · https://doi.org/10.1021/acs.analchem.5b00116

• High-Throughput Proteomics

  Annual Review of Analytical Chemistry · 2014 · https://doi.org/10.1146/annurev-anchem-071213-020216

• Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions

  Proceedings of the National Academy of Sciences · 2013 · https://doi.org/10.1073/pnas.1221210110

• Dengue Virus Infection Perturbs Lipid Homeostasis in Infected Mosquito Cells

  PLoS Pathogens · 2012 · https://doi.org/10.1371/journal.ppat.1002584

• Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum

  Proceedings of the National Academy of Sciences · 2012 · https://doi.org/10.1073/pnas.1204366109

• Identification of Proteins in Human Cytomegalovirus (HCMV) Particles: the HCMV Proteome

  Journal of Virology · 2004 · https://doi.org/10.1128/jvi.78.20.10960-10966.2004

• An accurate mass tag strategy for quantitative and high-throughput proteome measurements

  PROTEOMICS · 2002 · https://doi.org/10.1002/1615-9861(200205)2:5<513::aid-prot513>3.0.co;2-w

• Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

  Proceedings of the National Academy of Sciences · 2002 · https://doi.org/10.1073/pnas.172170199

• High Throughput Proteome-Wide Precision Measurements of Protein Expression Using Mass Spectrometry

  Journal of the American Chemical Society · 1999 · https://doi.org/10.1021/ja991063o

Current projects

No projects listed.