J Stamatoyannopoulos

Research interests

Publications

• Patterns of Growth and Decline in Lung Function in Persistent Childhood Asthma

  New England Journal of Medicine · 2016 · https://doi.org/10.1056/nejmoa1513737

• Integrative analysis of 111 reference human epigenomes

  Nature · 2015 · https://doi.org/10.1038/nature14248

• Cell-of-origin chromatin organization shapes the mutational landscape of cancer

  Nature · 2015 · 10.1038/nature14221

• Topologically associating domains are stable units of replication-timing regulation

  Nature · 2014 · 10.1038/nature13986

• Guidelines for investigating causality of sequence variants in human disease

  Nature · 2014 · 10.1038/nature13127

• Defining functional DNA elements in the human genome

  Proceedings of the National Academy of Sciences · 2014 · 10.1073/pnas.1318948111

• Resolving the complexity of the human genome using single-molecule sequencing

  Nature · 2014 · 10.1038/nature13907

• Dynamic DNA methylation across diverse human cell lines and tissues

  Genome Research · 2013 · 10.1101/gr.147942.112

• An Erythroid Enhancer of BCL11A Subject to Genetic Variation Determines Fetal Hemoglobin Level

  Science · 2013 · 10.1126/science.1242088

• An expansive human regulatory lexicon encoded in transcription factor footprints

  Nature · 2012 · 10.1038/nature11212

• Systematic Localization of Common Disease-Associated Variation in Regulatory DNA

  Science · 2012 · https://doi.org/10.1126/science.1222794

• BEDOPS: high-performance genomic feature operations

  Bioinformatics · 2012 · 10.1093/bioinformatics/bts277

• Widespread plasticity in CTCF occupancy linked to DNA methylation

  Genome Research · 2012 · 10.1101/gr.136101.111

• The accessible chromatin landscape of the human genome

  Nature · 2012 · https://doi.org/10.1038/nature11232

• An integrated encyclopedia of DNA elements in the human genome

  The Journal of the American Medical Association (JAMA) Network (American Medical Association) · 2012

• ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  Genome Research · 2012 · https://doi.org/10.1101/gr.136184.111

• The Human Mitochondrial Transcriptome

  Cell · 2011 · 10.1016/j.cell.2011.06.051

• Chromatin accessibility pre-determines glucocorticoid receptor binding patterns

  Nature Genetics · 2011 · 10.1038/ng.759

• The NIH Roadmap Epigenomics Mapping Consortium

  Nature Biotechnology · 2010 · 10.1038/nbt1010-1045

• Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

  Nature · 2010 · 10.1038/nature09725

• Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

  Proceedings of the National Academy of Sciences · 2009 · 10.1073/pnas.0912402107

• Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

  Science · 2009 · https://doi.org/10.1126/science.1181369

• Mapping and sequencing of structural variation from eight human genomes

  Nature · 2008 · 10.1038/nature06862

• Quantifying similarity between motifs

  Genome biology · 2007 · 10.1186/gb-2007-8-2-r24

• Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

  Nature · 2007 · https://doi.org/10.1038/nature05874

Current projects

No projects listed.