Markus Göker

Research interests

Publications

• International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2022 Revision)

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2023 · https://doi.org/10.1099/ijsem.0.005585

• TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes

  Nucleic Acids Research · 2021 · https://doi.org/10.1093/nar/gkab902

• List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2020 · https://doi.org/10.1099/ijsem.0.004332

• Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

  Frontiers in Microbiology · 2020 · https://doi.org/10.3389/fmicb.2020.00468

• Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

  Frontiers in Microbiology · 2019 · https://doi.org/10.3389/fmicb.2019.02083

• TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy

  Nature Communications · 2019 · https://doi.org/10.1038/s41467-019-10210-3

• Genome-Based Taxonomic Classification of the Phylum Actinobacteria

  Frontiers in Microbiology · 2018 · https://doi.org/10.3389/fmicb.2018.02007

• Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

  Nature Methods · 2017 · https://doi.org/10.1038/nmeth.4458

• 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

  Nature Biotechnology · 2017 · https://doi.org/10.1038/nbt.3886

• VICTOR: genome-based phylogeny and classification of prokaryotic viruses

  Bioinformatics · 2017 · https://doi.org/10.1093/bioinformatics/btx440

• Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats

  The ISME Journal · 2017 · https://doi.org/10.1038/ismej.2016.198

• Toward a Novel Multilocus Phylogenetic Taxonomy for the Dermatophytes

  Mycopathologia · 2016 · https://doi.org/10.1007/s11046-016-0073-9

• Comparative genomics of biotechnologically important yeasts

  Proceedings of the National Academy of Sciences · 2016 · https://doi.org/10.1073/pnas.1603941113

• Genomic insights into the taxonomic status of the Bacillus cereus group

  Scientific Reports · 2015 · https://doi.org/10.1038/srep14082

• Phylogenetic classification of yeasts and related taxa within Pucciniomycotina

  Studies in Mycology · 2015 · https://doi.org/10.1016/j.simyco.2015.12.002

• Towards an integrated phylogenetic classification of the Tremellomycetes

  Studies in Mycology · 2015 · https://doi.org/10.1016/j.simyco.2015.12.001

• Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

  Standards in Genomic Sciences · 2014 · https://doi.org/10.1186/1944-3277-9-2

• Taxonomic use of DNA G+C content and DNA–DNA hybridization in the genomic age

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2014 · https://doi.org/10.1099/ijs.0.056994-0

• Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains

  PLoS Biology · 2014 · https://doi.org/10.1371/journal.pbio.1001920

• When should a DDH experiment be mandatory in microbial taxonomy?

  Archives of Microbiology · 2013 · https://doi.org/10.1007/s00203-013-0888-4

• Genome sequence-based species delimitation with confidence intervals and improved distance functions

  BMC Bioinformatics · 2013 · https://doi.org/10.1186/1471-2105-14-60

• Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

  Standards in Genomic Sciences · 2010 · https://doi.org/10.4056/sigs.541628

• Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

  Standards in Genomic Sciences · 2010 · https://doi.org/10.4056/sigs.531120

• En route to a genome-based classification of Archaea and Bacteria?

  Systematic and Applied Microbiology · 2010 · https://doi.org/10.1016/j.syapm.2010.03.003

• Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences

  Mycologia · 2002 · https://doi.org/10.1080/15572536.2003.11833177

Current projects

No projects listed.