Jan Baumbach

Research interests

Publications

• Network analysis methods for studying microbial communities: A mini review

  Computational and Structural Biotechnology Journal · 2021 · https://doi.org/10.1016/j.csbj.2021.05.001

• Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing

  mSphere · 2021 · https://doi.org/10.1128/msphere.01202-20

• Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes

  Cell Host & Microbe · 2020 · https://doi.org/10.1016/j.chom.2020.06.004

• Molecular networks in Network Medicine: Development and applications

  WIREs Systems Biology and Medicine · 2020 · https://doi.org/10.1002/wsbm.1489

• Mass-spectrometry-based draft of the Arabidopsis proteome

  Nature · 2020 · https://doi.org/10.1038/s41586-020-2094-2

• From single drug targets to synergistic network pharmacology in ischemic stroke

  Proceedings of the National Academy of Sciences · 2019 · https://doi.org/10.1073/pnas.1820799116

• Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology

  Bioinformatics · 2019 · https://doi.org/10.1093/bioinformatics/btz363

• Systematic Review of Economic Impact Studies of Artificial Intelligence in Health Care

  Journal of Medical Internet Research · 2019 · https://doi.org/10.2196/16866

• Osteogenesis depends on commissioning of a network of stem cell transcription factors that act as repressors of adipogenesis

  Nature Genetics · 2019 · https://doi.org/10.1038/s41588-019-0359-1

• Epidemiology of Invasive Group B Streptococcal Infections Among Nonpregnant Adults in the United States, 2008-2016

  JAMA Internal Medicine · 2019 · https://doi.org/10.1001/jamainternmed.2018.7269

• Comparing the performance of biomedical clustering methods

  Nature Methods · 2015 · https://doi.org/10.1038/nmeth.3583

• Enhancing disease surveillance with novel data streams: challenges and opportunities

  EPJ Data Science · 2015 · https://doi.org/10.1140/epjds/s13688-015-0054-0

• Current breathomics—a review on data pre-processing techniques and machine learning in metabolomics breath analysis

  Journal of Breath Research · 2014 · https://doi.org/10.1088/1752-7155/8/2/027105

• Review on Ion Mobility Spectrometry. Part 1: current instrumentation

  The Analyst · 2014 · https://doi.org/10.1039/c4an01100g

• Association Between Use of Statins and Mortality Among Patients Hospitalized With Laboratory-Confirmed Influenza Virus Infections: A Multistate Study

  The Journal of Infectious Diseases · 2011 · https://doi.org/10.1093/infdis/jir695

• clusterMaker: a multi-algorithm clustering plugin for Cytoscape

  BMC Bioinformatics · 2011 · https://doi.org/10.1186/1471-2105-12-436

• Role of thioredoxin reductase 1 and thioredoxin interacting protein in prognosis of breast cancer

  Breast Cancer Research · 2010 · https://doi.org/10.1186/bcr2599

• AltAnalyze and DomainGraph: analyzing and visualizing exon expression data

  Nucleic Acids Research · 2010 · https://doi.org/10.1093/nar/gkq405

• Graph-based analysis and visualization of experimental results with ONDEX

  Bioinformatics · 2006 · https://doi.org/10.1093/bioinformatics/btl081

• Detection of human metabolites using multi-capillary columns coupled to ion mobility spectrometers

  Journal of Chromatography A · 2005 · https://doi.org/10.1016/j.chroma.2005.01.055

• Ion Mobility Spectrometry: Arriving on Site and Moving beyond a Low Profile

  Applied Spectroscopy · 1999 · https://doi.org/10.1366/0003702991947847

Current projects

No projects listed.