Samuel Kaski

Research interests

Publications

• Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium

  mBio · 2020 · 10.1128/mbio.03284-19

• Fundamentals and Recent Developments in Approximate Bayesian Computation

  Systematic Biology · 2016 · 10.1093/sysbio/syw077

• Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization

  Bioinformatics · 2016 · https://doi.org/10.1093/bioinformatics/btw433

• A community effort to assess and improve drug sensitivity prediction algorithms

  Nature Biotechnology · 2014 · https://doi.org/10.1038/nbt.2877

• Bayesian Canonical correlation analysis

  Journal of Machine Learning Research · 2013

• Information Retrieval Perspective to Nonlinear Dimensionality Reduction for Data Visualization

  · 2010

• Local multidimensional scaling

  Neural Networks · 2006 · 10.1016/j.neunet.2006.05.014

• Bibliography of Self-Organizing Map SOM) Papers: 1998-2001 Addendum

  · 2003

• Trustworthiness and metrics in visualizing similarity of gene expression

  BMC Bioinformatics · 2003 · 10.1186/1471-2105-4-48

• Mining massive document collections by the WEBSOM method

  Information Sciences · 2003 · 10.1016/j.ins.2003.03.017

• Clustering Based on Conditional Distributions in an Auxiliary Space

  Neural Computation · 2002 · 10.1162/089976602753284509

• Dimensionality reduction by random mapping: fast similarity computation for clustering

  · 2002 · 10.1109/ijcnn.1998.682302

• Analysis and visualization of gene expression data using Self-Organizing Maps

  Neural Networks · 2002 · 10.1016/s0893-6080(02)00070-9

• Bankruptcy analysis with self-organizing maps in learning metrics

  IEEE Transactions on Neural Networks · 2001 · 10.1109/72.935102

• Neighborhood Preservation in Nonlinear Projection Methods: An Experimental Study

  Lecture notes in computer science · 2001 · 10.1007/3-540-44668-0_68

• Self organization of a massive document collection

  IEEE Transactions on Neural Networks · 2000 · 10.1109/72.846729

• Kohonen Maps

  · 1999

• Bibliography of Self-Organizing Map (SOM) Papers: 1981-1997

  · 1998

• WEBSOM – Self-organizing maps of document collections

  Neurocomputing · 1998 · 10.1016/s0925-2312(98)00039-3

• Self-Organized Formation of Various Invariant-Feature Filters in the Adaptive-Subspace SOM

  Neural Computation · 1997 · 10.1162/neco.1997.9.6.1321

• Exploratory Data Analysis by the Self-Organizing Map: Structures of Welfare and Poverty in the World

  · 1996

• Comparing self-organizing maps

  Lecture notes in computer science · 1996 · 10.1007/3-540-61510-5_136

• Newsgroup Exploration with WEBSOM Method and Browsing Interface

  · 1996

• Self-organizing maps of document collections: A new approach to interactive exploration

  · 1996

• Winner-take-all networks for physiological models of competitive learning

  Neural Networks · 1994 · 10.1016/s0893-6080(05)80154-6

Current projects

No projects listed.