Sampsa Hautaniemi

Research interests

Publications

• Longitudinal single-cell RNA-seq analysis reveals stress-promoted chemoresistance in metastatic ovarian cancer

  Science Advances · 2022 · 10.1126/sciadv.abm1831

• Longitudinal single-cell RNA-seq analysis reveals stress-promoted chemoresistance in metastatic ovarian cancer

  Science Advances · 2022 · 10.1126/sciadv.abm1831

• Co-evolution of matrisome and adaptive adhesion dynamics drives ovarian cancer chemoresistance

  Nature Communications · 2021 · 10.1038/s41467-021-24009-8

• Co-evolution of matrisome and adaptive adhesion dynamics drives ovarian cancer chemoresistance

  Nature Communications · 2021 · 10.1038/s41467-021-24009-8

• Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer

  Nature Communications · 2020 · https://doi.org/10.1038/s41467-020-15315-8

• Evolutionary history of metastatic breast cancer reveals minimal seeding from axillary lymph nodes

  Journal of Clinical Investigation · 2018 · 10.1172/jci96149

• Tissue‐specific pioneer factors associate with androgen receptor cistromes and transcription programs

  The EMBO Journal · 2014 · 10.1002/embj.201385895

• Adipocyte morphology and implications for metabolic derangements in acquired obesity

  International Journal of Obesity · 2014 · 10.1038/ijo.2014.31

• Characterising metabolically healthy obesity in weight-discordant monozygotic twins

  Diabetologia · 2013 · 10.1007/s00125-013-3066-y

• FoxA1 Specifies Unique Androgen and Glucocorticoid Receptor Binding Events in Prostate Cancer Cells

  Cancer Research · 2012 · 10.1158/0008-5472.can-12-2350

• FoxA1 Specifies Unique Androgen and Glucocorticoid Receptor Binding Events in Prostate Cancer Cells

  Cancer Research · 2012 · 10.1158/0008-5472.can-12-2350

• Dual role of FoxA1 in androgen receptor binding to chromatin, androgen signalling and prostate cancer

  The EMBO Journal · 2011 · https://doi.org/10.1038/emboj.2011.328

• PINA v2.0: mining interactome modules

  Nucleic Acids Research · 2011 · https://doi.org/10.1093/nar/gkr967

• KSHV-Initiated Notch Activation Leads to Membrane-Type-1 Matrix Metalloproteinase-Dependent Lymphatic Endothelial-to-Mesenchymal Transition

  Cell Host & Microbe · 2011 · 10.1016/j.chom.2011.10.011

• Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme

  Genome Medicine · 2010 · 10.1186/gm186

• Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme

  Genome Medicine · 2010 · 10.1186/gm186

• Early recovery from cow's milk allergy is associated with decreasing IgE and increasing IgG4 binding to cow's milk epitopes

  Journal of Allergy and Clinical Immunology · 2010 · 10.1016/j.jaci.2010.03.025

• Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues

  Genome biology · 2008 · 10.1186/gb-2008-9-9-r139

• The gene expression signature of genomic instability in breast cancer is an independent predictor of clinical outcome

  International Journal of Cancer · 2008 · 10.1002/ijc.24017

• Integrated network analysis platform for protein-protein interactions

  Nature Methods · 2008 · https://doi.org/10.1038/nmeth.1282

• Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues

  Genome biology · 2008 · 10.1186/gb-2008-9-9-r139

• Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

  Proceedings of the National Academy of Sciences · 2007 · https://doi.org/10.1073/pnas.0608638104

• Effects of HER2 overexpression on cell signaling networks governing proliferation and migration

  Molecular Systems Biology · 2006 · 10.1038/msb4100094

• Effects of HER2 overexpression on cell signaling networks governing proliferation and migration

  Molecular Systems Biology · 2006 · 10.1038/msb4100094

• Gene-Expression Profiling Predicts Recurrence in Dukes’ C Colorectal Cancer

  Gastroenterology · 2005 · 10.1053/j.gastro.2005.06.066

• Are data from different gene expression microarray platforms comparable?

  Genomics · 2004 · 10.1016/j.ygeno.2004.01.004

• Are data from different gene expression microarray platforms comparable?

  Genomics · 2004 · 10.1016/j.ygeno.2004.01.004

• High-Resolution Analysis of Gene Copy Number Alterations in Human Prostate Cancer Using CGH on cDNA Microarrays: Impact of Copy Number on Gene Expression

  Neoplasia · 2004 · 10.1593/neo.03439

• Nonsense-mediated decay microarray analysis identifies mutations of EPHB2 in human prostate cancer

  Nature Genetics · 2004 · 10.1038/ng1408

• Nonsense-mediated decay microarray analysis identifies mutations of EPHB2 in human prostate cancer

  Nature Genetics · 2004 · 10.1038/ng1408

• Optimized LOWESS normalization parameter selection for DNA microarray data

  BMC Bioinformatics · 2004 · 10.1186/1471-2105-5-194

• RNAi Microarray Analysis in Cultured Mammalian Cells

  Genome Research · 2003 · 10.1101/gr.1478703

• RNAi Microarray Analysis in Cultured Mammalian Cells

  Genome Research · 2003 · 10.1101/gr.1478703

• Impact of DNA amplification on gene expression patterns in breast cancer.

  PubMed · 2002

Current projects

No projects listed.