Umer Zeeshan Ijaz

Research interests

Publications

• Combined Stochastic and Deterministic Processes Drive Community Assembly of Anaerobic Microbiomes During Granule Flotation

  Frontiers in Microbiology · 2021 · https://doi.org/10.3389/fmicb.2021.666584

• Long solids retention times and attached growth phase favor prevalence of comammox bacteria in nitrogen removal systems

  Water Research · 2019 · https://doi.org/10.1016/j.watres.2019.115268

• The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool

  ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam) · 2018 · https://doi.org/10.1186/s40168-018-0449-9

• Comprehensive Longitudinal Microbiome Analysis of the Chicken Cecum Reveals a Shift From Competitive to Environmental Drivers and a Window of Opportunity for Campylobacter

  Frontiers in Microbiology · 2018 · https://doi.org/10.3389/fmicb.2018.02452

• Treatment of Active Crohn’s Disease With an Ordinary Food-based Diet That Replicates Exclusive Enteral Nutrition

  Gastroenterology · 2018 · https://doi.org/10.1053/j.gastro.2018.12.002

• Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use

  PLoS Pathogens · 2017 · https://doi.org/10.1371/journal.ppat.1006653

• Emerging investigators series: microbial communities in full-scale drinking water distribution systems – a meta-analysis

  Environmental Science Water Research & Technology · 2016 · https://doi.org/10.1039/c6ew00030d

• A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

  BMC Genomics · 2016 · https://doi.org/10.1186/s12864-015-2194-9

• Microbial community redundancy in anaerobic digestion drives process recovery after salinity exposure

  Water Research · 2016 · https://doi.org/10.1016/j.watres.2016.12.042

• Host–microbiome interactions in human type 2 diabetes following prebiotic fibre (galacto-oligosaccharide) intake

  British Journal Of Nutrition · 2016 · https://doi.org/10.1017/s0007114516004086

• Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

  BMC Bioinformatics · 2016 · https://doi.org/10.1186/s12859-016-0976-y

• Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

  Nucleic Acids Research · 2015 · https://doi.org/10.1093/nar/gku1341

• Bacterial diversity along a 2600 km river continuum

  Environmental Microbiology · 2015 · https://doi.org/10.1111/1462-2920.12886

• Metagenomic Evidence for the Presence of Comammox Nitrospira -Like Bacteria in a Drinking Water System

  mSphere · 2015 · https://doi.org/10.1128/msphere.00054-15

• Extensive Modulation of the Fecal Metagenome in Children With Crohn’s Disease During Exclusive Enteral Nutrition

  The American Journal of Gastroenterology · 2015 · https://doi.org/10.1038/ajg.2015.357

• Binning metagenomic contigs by coverage and composition

  Nature Methods · 2014 · https://doi.org/10.1038/nmeth.3103

• Three-dimensional ultrasound imaging

  Proceedings of the Institution of Mechanical Engineers Part H Journal of Engineering in Medicine · 2009 · https://doi.org/10.1243/09544119jeim586

Current projects

No projects listed.